Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq493 780 0.0 seq19 161 7e-35 seq6 84.2 1e-11 >seq493 Length=52014 Score = 780 bits (864), Expect = 0.0 Identities = 434/435 (99%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 82690 ATATCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 82749 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47810 ATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 47869 Query 82750 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 82809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47870 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 47929 Query 82810 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 82869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47930 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 47989 Query 82870 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 82929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 47990 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 48049 Query 82930 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 82989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48050 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 48109 Query 82990 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 83049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48110 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 48169 Query 83050 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 83109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48170 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 48229 Query 83110 CCGTTCATCCAGCAG 83124 ||||||||||||||| Sbjct 48230 CCGTTCATCCAGCAG 48244 Score = 780 bits (864), Expect = 0.0 Identities = 434/435 (99%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 82690 ATATCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 82749 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50590 ATCTCACTCTCCTTTGATGCGAATGCCAGCGTCAGACATCATATGCAGATACTCACCTGC 50649 Query 82750 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 82809 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50650 ATCCTGAACCCATTGACCTCCAACCCCGTAATAGCGATGCGTAATGATGTCGATAGTTAC 50709 Query 82810 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 82869 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50710 TAACGGGTCTTGTTCGATTAACTGCCGCAGAAACTCTTCCAGGTCACCAGTGCAGTGCTT 50769 Query 82870 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 82929 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50770 GATAACAGGAGTCTTCCCAGGATGGCGAACAACAAGAAACTGGTTTCCGTCTTCACGGAC 50829 Query 82930 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 82989 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50830 TTCGTTGCTTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATA 50889 Query 82990 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 83049 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50890 CTCACGCTGCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTAC 50949 Query 83050 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 83109 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50950 TGTTAGCGCAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTC 51009 Query 83110 CCGTTCATCCAGCAG 83124 ||||||||||||||| Sbjct 51010 CCGTTCATCCAGCAG 51024 >seq19 Length=1029424 Score = 161 bits (178), Expect = 7e-35 Identities = 463/700 (66%), Gaps = 14/700 (2%) Strand=Plus/Plus Query 96718 GTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCCATTTCGTTGCTTTCCGAT 96777 ||| | |||| |||| |||| | | ||||| || ||||| || || ||||| || || Sbjct 739163 GTACTTGCCGATAAAGGCCAGGCGGATAGTGCCGATGGGGCCGTTCCGCTGCTTGCCAAT 739222 Query 96778 AATTACCTCGGCAATGCCCTTCATTTCGC-TATCCGGGTGATAAACTTCGTCGCGATACA 96836 || | ||||||||||||||| | || | || || ||| || || || || |||| Sbjct 739223 GATGATCTCGGCAATGCCCTTG-TCCGGCGTGTCTTCGTTATAGACCTCATCCCGGTACA 739281 Query 96837 AAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTCACGTAAATCTGAATTTA 96896 ||||||||| | ||| ||||||||||| || || || ||||| |||| ||| || || | Sbjct 739282 CAAACATGATGACGTCGGCGTCCTGCTCGATGGCGCCCGATTCCCGTAGATCGGAGTTAA 739341 Query 96897 CCGGTCGTTTGTCCGCACGCTGTTCAAGCGATCGATTAAGTTGTGACAATGCCACCACC- 96955 |||| || |||| | ||||| ||||| || || || || |||| ||||||||| Sbjct 739342 CCGGGCGCTTGTTGGGCCGCTGCTCAAGACTCCGGTTGAGCTGGGACAGCGCCACCACCG 739401 Query 96956 GGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAATCTCGGCAATTTCCAGC 97015 || | || | ||| || || | ||||||| || || || || || | ||| || | Sbjct 739402 GGCAGCTG-AGTTCTTTGGCAATACCCTTCAGGGACCGCGAGATTTCCGAAATCTCGGCC 739460 Query 97016 GTTCGGTTATC-TTGCAGCTCCGGGACGCGCATAAGTTGCAGGTAGTCGATCATAATCAT 97074 || ||| || || || | || || ||||| || ||||||||||||| ||| |||| Sbjct 739461 GTCCGGCCTTCGGTGTTGC-CGGGTACCCGCATCAGCTGCAGGTAGTCGACCATGATCAG 739519 Query 97075 GC---TCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAACGTAGCTCTGTCGG 97131 || || ||| |||| || || ||| ||||| ||||| || | || || || Sbjct 739520 GCCTATCTTACCGTCATTCTCCCGGGCAATACGTCGAGCCCGGGAGCGCATTTCCGTGGG 739579 Query 97132 CGTCAGGGCGCTTGAGTCATCAATAAAAATATTCTGCTTGTCCAACAGAATACCCATTGC 97191 ||||| | || || ||||| ||| | |||||||| ||||| | || || Sbjct 739580 GCTCAGGCCCGGTGTATCGTCAATGTAAA---GCGGCTTGTCCTTCAGAAGGCTCACCGC 739636 Query 97192 GCCAGAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCTGTTCGAATACGAGTCTGATC 97251 | | | ||| | ||| || || || | || | || || | |||||||| Sbjct 739637 GGACGTCAGCCGGGGCCAGTCGTCCTCTTCCAGCTTACCGCCACGGACCTTGGTCTGATC 739696 Query 97252 AACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGGTGGCTCGGCATCTCAAGGCT 97311 || ||| | || || | || ||||| || | |||||| || | || Sbjct 739697 AATGCGCCCGAGCGACGAGAGCATACGCATGGCGAGGGCATCCGCCGGCATTTCCATACT 739756 Query 97312 AAAAACCAATACGGGCTTATCGTTAC-GAACTGCGGCATTTTCGACGAGATTCATCGCAA 97370 || |||| || ||| | || | | || | | ||| || || || | |||||| || | Sbjct 739757 GAATACCAGAACCGGCGTGCCGGTGCTGATCAG-GGCGTTCTCTACAATATTCATGGCGA 739815 Query 97371 ACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGAT 97410 | || ||||| ||||| || ||||| | || |||||||| Sbjct 739816 AGGTCGTCTTACCCATGGAGGGGCGCCCTGCCACAATGAT 739855 >seq6 Length=3173221 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 62473 AGTGGTTTCACTGAGGAAGAACTATTAGGCCAGCCTCACAACATCGTAAGACACCCAGAT 62532 |||||||||| ||| || || | ||||||||||||||||| || | || || ||| Sbjct 470318 AGTGGTTTCAGCCGGGACGAGCTGATTGGCCAGCCTCACAACATTGTCCGGCATCCCGAT 470377 Query 62533 ATGCCGCCTGCTGCATTTGAGCATATGTGGAGTACA-TTAAAATCTGGCCGCTCATGGAT 62591 ||||| || || || | |||| | |||||| ||| | || | || | | ||||| Sbjct 470378 ATGCCACCCGCCGCCTATGAGAACATGTGG-TCACACCTCAAGGCCGGACAGCCGTGGAT 470436 Query 62592 GGGGCTAGTAAAAAATCGCTGTAAAAATGGCGACCACTATTGGGTAAGTGCTTATGTAAC 62651 ||| || ||||| || || || || || ||||| ||| ||||| ||||| || || || Sbjct 470437 GGGCCTGGTAAAGAACCGTTGCAAGAACGGCGATTTCTACTGGGTCAGTGCCTACGTCAC 470496 Query 62652 GCC 62654 || Sbjct 470497 CCC 470499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330896247965512