Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq53 170 1e-37 seq63 152 4e-32 seq36 149 5e-31 >seq53 Length=625924 Score = 170 bits (188), Expect = 1e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||||||| ||| ||||| ||||| |||||| ||||||||||| || Sbjct 125393 CATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 125452 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 125453 GCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 125512 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | || ||||| | || || Sbjct 125513 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTC 125572 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | ||| || ||||| |||||||||||||| ||||||||||||||| Sbjct 125573 CACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||||||| ||| ||||| ||||| |||||| ||||||||||| || Sbjct 124937 CATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 124996 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 124997 GCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 125056 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | || ||||| | || || Sbjct 125057 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTC 125116 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | ||| || ||||| |||||||||||||| |||||||| |||||| Sbjct 125117 CACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 167 bits (184), Expect = 2e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | |||||||| ||| ||||| ||||| |||||| ||||||||||| || Sbjct 125165 CATGCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTC 125224 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| ||| |||| ||||||||||| ||||| ||||||| |||||||| || | Sbjct 125225 GCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGG 125284 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||||||||||| | || ||||| | || || Sbjct 125285 GGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTC 125344 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| || | ||| || ||||| |||||||||||||| |||||||| |||||| Sbjct 125345 CACGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 163 bits (180), Expect = 2e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | ||| |||| ||| ||||| ||||| |||||| ||||||||||| ||| | Sbjct 124713 CCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 124772 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| |||| ||||||||||| ||||| ||||||| |||||||| || | || Sbjct 124773 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 124832 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||||||||||| | || ||||| | || ||||| Sbjct 124833 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 124892 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || | ||| || ||||| |||||||||||||| |||||||| |||||| Sbjct 124893 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 129 bits (142), Expect = 4e-25 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| ||| ||| |||| ||||||||||| ||||| |||| Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | || ||||| ||| ||||||||||||| Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 126212 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || ||||| || | ||| || ||||| ||||| ||||||||||||| Sbjct 126213 CGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGA 126272 Query 44328 AGATTTGC--ATGATGTGAA 44345 | || ||| | || ||||| Sbjct 126273 AAATCTGCGAAGGACGTGAA 126292 >seq63 Length=566113 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | ||| |||| ||| ||||| || || |||||| ||||||||||| || Sbjct 328817 CATGCCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTC 328876 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| |||| ||||||||||| || || ||||||| |||||||| || | Sbjct 328877 GCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGG 328936 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| |||||| |||||| | || ||||||| || ||| Sbjct 328937 GGGGATGCCCTCCTTGTCCTGGATCTTCGGCTTCACGCCGTCGATCGTGTCGGAGGGTTC 328996 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || | ||| || |||||||||||||||||||| |||||||| |||||| Sbjct 328997 TACGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCATG 329048 Score = 105 bits (116), Expect = 5e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||| ||||| ||| || ||| |||| ||||||||||| ||||| |||| Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||| || | || | || ||||| ||| ||||| ||||||| Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || ||||| || | || | ||||| |||||||| ||||| || | Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 44328 AGATTTGC 44335 |||| ||| Sbjct 329621 AGATCTGC 329628 >seq36 Length=729648 Score = 149 bits (164), Expect = 5e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || ||| || ||||||||||| ||| || ||| |||| ||| Sbjct 222031 ACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCC 221972 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| |||||||||||| | || | ||| ||||| ||| Sbjct 221971 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGG 221912 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||||||||||| | || ||||| | || ||||| |||| || || ||||| Sbjct 221911 ATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTG 221852 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||| |||||||| |||||| Sbjct 221851 CCCGTGAGGGTCTTGACGAAGATCTGCATG 221822 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || ||| |||| ||||||||||| |||||||||| Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||||||| | || | || ||||| ||| ||||||||||||| Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220909 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || ||||| |||| || || ||||| |||||||||||||| |||| Sbjct 220908 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220849 Query 44328 AGATTTGCATG 44338 |||| |||||| Sbjct 220848 AGATCTGCATG 220838 Score = 147 bits (162), Expect = 2e-30 Identities = 147/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || ||| |||| ||||||||||| |||||||||| Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||||||| | || | || ||||| ||| ||||||||||||| Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 221401 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || ||||| |||| || || ||||| |||||||||||||| |||| Sbjct 221400 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 221341 Query 44328 AGATTTGCATG 44338 |||| |||||| Sbjct 221340 AGATCTGCATG 221330 Score = 141 bits (156), Expect = 7e-29 Identities = 146/191 (76%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || ||| |||| ||||||||||| ||||| |||| Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||||||||| | || | || ||||| ||| ||||||||||||| Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220420 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || ||||| |||| || || ||||| |||||||||||||| |||| Sbjct 220419 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220360 Query 44328 AGATTTGCATG 44338 |||| |||||| Sbjct 220359 AGATCTGCATG 220349 Score = 107 bits (118), Expect = 1e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || ||| |||| ||||||||||| |||||||||| Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| ||||||||| || | || | || ||||| ||| || || ||||||| Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGCCGT 219947 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | || ||||| | || || || || | || || ||||| |||||||| ||||| |||| Sbjct 219946 CGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGA 219887 Query 44328 AGATTTG 44334 | || || Sbjct 219886 AAATCTG 219880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359987188435644