Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq53 174 1e-38 seq63 141 9e-29 seq36 138 1e-27 >seq53 Length=625924 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | ||| || || ||||| ||||||||| ||||| |||||| Sbjct 124712 GCCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 124771 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 124772 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 124831 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||||| ||| || | | ||||| | ||||| Sbjct 124832 GATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTCGATCGTGTCCGAGGGCTCCA 124890 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| || ||||| ||||| ||||||||| Sbjct 124891 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | ||| || || ||||| ||||||||| ||||| |||||| Sbjct 124940 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 124999 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 125000 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125059 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||||| ||| || | | ||||| | ||||| Sbjct 125060 GATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTCGATCGTGTCCGAGGGCTCCA 125118 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| || ||||| ||||| ||||||||| Sbjct 125119 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 174 bits (192), Expect = 1e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | ||| || || ||||| ||||||||| ||||| |||||| Sbjct 125168 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125227 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 125228 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125287 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||||| ||| || | | ||||| | ||||| Sbjct 125288 GATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTCGATCGTGTCCGAGGGCTCCA 125346 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| || ||||| ||||| ||||||||| Sbjct 125347 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 168 bits (186), Expect = 6e-37 Identities = 177/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || | | ||| || || ||||| ||||||||| ||||| |||||| Sbjct 125396 GCCACCGCGCAGTCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCT 125455 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| || ||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 125456 GAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 125515 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || |||||| ||| || | | ||||| | ||||| Sbjct 125516 GATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTCGATCGTGTCCGAGGGCTCCA 125574 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| || ||||| ||||| || |||||| Sbjct 125575 CGTCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 158 bits (174), Expect = 1e-33 Identities = 150/189 (79%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| ||||||||| |||| || ||||||||||||||||| | Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||||| ||| | || |||||||||| ||| || |||||| ||| || Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCG 126211 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | |||||| || | ||| || || || ||||| || ||||| ||| Sbjct 126212 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACG 126271 Query 41852 AAAATCTGC 41860 ||||||||| Sbjct 126272 AAAATCTGC 126280 >seq63 Length=566113 Score = 141 bits (156), Expect = 9e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | | ||| || || || || ||||||||| ||||| |||||| Sbjct 328820 GCCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 328879 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 |||||||| |||| || |||||||| || ||||| ||||||||||| ||||||| ||| Sbjct 328880 CAGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGG 328939 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| || ||||| ||| || | | |||||| | || | Sbjct 328940 GATGCCCTCCTTGTCCTGGATCTTCGGCTTC-ACGCCGTCGATCGTGTCGGAGGGTTCTA 328998 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 | || | ||| || || || ||||| || ||||| ||||| ||||||||| Sbjct 328999 CGTCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCATG 329048 Score = 122 bits (134), Expect = 8e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || || || |||||| |||||||| |||| || |||||||| |||||||| | Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||||||||| ||||||| ||| | || |||||||||| ||| || |||||| ||| || Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTC-ACGCCG 329559 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | |||||| || | || | || || ||||| || ||||| || Sbjct 329560 TCGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACA 329619 Query 41852 AAAATCTGC 41860 || |||||| Sbjct 329620 AAGATCTGC 329628 >seq36 Length=729648 Score = 138 bits (152), Expect = 1e-27 Identities = 145/188 (77%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| || ||||| |||| || |||||||||||||| || | Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| ||||||| ||| | || |||||||||| ||||||||||||| ||| || Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTC-ACGCCG 219948 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | ||| || || | || || || || ||||| || ||||| ||| Sbjct 219947 TCGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACG 219888 Query 41852 AAAATCTG 41859 |||||||| Sbjct 219887 AAAATCTG 219880 Score = 136 bits (150), Expect = 4e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| |||||||| |||| || ||||||||||||||||| | Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| || || | || | || |||||||||| ||| || |||||| ||| || Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCG 220421 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | |||||| |||| || || || || ||||| || ||||| ||| Sbjct 220420 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220361 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 220360 AAGATCTGCATG 220349 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 |||||||| || || | || || || || || ||| ||||| ||||| |||||| Sbjct 222049 CCGCCGCGCAGGCGAAGAACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTC 221990 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| || ||||||||||||||||| ||||| ||||| || || | || Sbjct 221989 AGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCAGGCGGG 221930 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || |||||| ||| || | | ||||| | |||||| Sbjct 221929 ATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTCGATCGTGTCCGAGGGCTCCAC 221871 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || ||||| || ||||| ||||| ||||||||| Sbjct 221870 GTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 221822 Score = 132 bits (146), Expect = 4e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| |||||||| |||| || |||||||||||||| || | Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| || || | || | || |||||||||| ||| || |||||| ||| || Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCG 220910 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | |||||| |||| || || || || ||||| || ||||| ||| Sbjct 220909 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 220850 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 220849 AAGATCTGCATG 220838 Score = 132 bits (146), Expect = 4e-26 Identities = 146/192 (76%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| |||||||| |||| || |||||||||||||| || | Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||| || || | || | || |||||||||| ||| || |||||| ||| || Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCG 221402 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | ||||| | |||||| |||| || || || || ||||| || ||||| ||| Sbjct 221401 TCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 221342 Query 41852 AAAATCTGCATG 41863 || ||||||||| Sbjct 221341 AAGATCTGCATG 221330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299769918400