Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14 105 1e-17 seq2 102 2e-16 seq32 87.8 4e-12 seq30 84.2 5e-11 seq11 84.2 5e-11 seq6 84.2 5e-11 seq1 84.2 5e-11 >seq14 Length=3614499 Score = 105 bits (116), Expect = 1e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 230446 CTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 230505 || || ||||||||| | || ||| ||||||||||||| ||| |||||||| | Sbjct 1009999 CTGATCGGCATGAACAGCGCGCTCATGCGACAGTACATCGAGTTCTGCGCCGACCGGCTG 1010058 Query 230506 TTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAG 230565 | | | ||||| | |||||| ||||||||| | ||||| || | | |||||| Sbjct 1010059 CTGATGGAGCTTGGCTGCGAGAAGAAGTACAACTCGACCAACCCGTTCGACTGGATGGAG 1010118 Query 230566 CTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618 | |||||||| || |||||||||||||||||||| ||| | ||| | || || Sbjct 1010119 ATGATTTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGAGAGTCGGGGAGTA 1010171 >seq2 Length=9289656 Score = 102 bits (112), Expect = 2e-16 Identities = 439/672 (65%), Gaps = 33/672 (5%) Strand=Plus/Plus Query 319015 CGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCA 319074 ||||| |||| |||| ||| || ||| ||| | || ||||||||||||||||| ||| Sbjct 2234321 CGCCACCGGATGTACTCGTTCGGGGTCTTGTTCATGTGGTCCTCGATGTGGTGGAAGGCA 2234380 Query 319075 TGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGGCT 319134 ||||| |||| |||||| | ||| ||| |||||| ||| || ||| | | | Sbjct 2234381 TGCTGCGCCAAGTAAGCTACTCGCGCATTGGGATGCCGCCACACGTCGCCGGTCTGCGGT 2234440 Query 319135 TCCATTTGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCACC 319194 | | | || || |||||||| || | ||| |||||||| ||||| ||||||| | Sbjct 2234441 ACAACCTCGCCAGTCAGCACCTTGATCATGGTCGACTTCCCCGCGCCGTTCTCGCCCA-C 2234499 Query 319195 ACAC-CGATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTC 319253 |||| | | | || ||| || || ||| || | |||| |||| || Sbjct 2234500 ACACGCAACACGCGACGACAGAGAGACTTGGACA---GAGATGTCGAAGA-GGGTGGGCA 2234555 Query 319254 CG----TACCCGGATACTTGAA-CCCCACACCGCGTAGCTTCATGATGGCACGGTCCTTC 319308 || | || || ||| |||| | || || | |||||| | || |||| Sbjct 2234556 CGGTGTTGCCGGGGTACGTGAAGTCGCAGTGTGC-CATCTTCATCAGCGCCTTACCCTTG 2234614 Query 319309 GAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTA 319368 || ||| ||||||| |||||||| ||||| || || | ||| | | | | Sbjct 2234615 GACTTGACGCCCTCGATCGGCCCGGGCTGCGGGAAGTTGAACTTCAGCTTGGACGCCTTG 2234674 Query 319369 AGGGCGTAGTA--AC-TCGCTGATTCGGGACGCTT--CTTCACGAACTCGGACAGATTTC 319423 || || || | || | || | |||| | || | ||| |||||| ||| |||| Sbjct 2234675 AGCTCGAAGAACGACTTGGCCG--TCGG---GTTTACCGCCACAAACTCGTTCAGGTTTC 2234729 Query 319424 CCTTGTACTTCTTCAGCTTTAGGTT-AGGTTCGTAATGGATAATAGAGG-TGCAAACAG- 319480 ||||| | || ||||| ||||| | ||| || |||| | || ||| | ||| Sbjct 2234730 CCTTGAAGTTGACAAGCTTCAGGTTCTCGATCG-AAAGGAT----GTGGCTGC-AGCAGT 2234783 Query 319481 CGTCGAGGAACCCGGAGTCGTGTGACACAATCA-CGCACGAAACGTCCTTAAGGTTGATC 319539 ||| ||||| || |||||||| ||||| || | ||| || |||| | ||| || | Sbjct 2234784 CGTTGAGGAGACCAGAGTCGTGCGACACCATGATCGC-CGTGACGTTGGTGAGGCTGTTG 2234842 Query 319540 AGGTATTCAATCAACCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGA 319599 ||||| | ||| |||| |||||| ||| | ||||||||||||||||| || Sbjct 2234843 AGGTAGTTCTTCACCCACGCCACGTTGATGACATCCAAGTGGTTGGTCGGCTCGTCCAGC 2234902 Query 319600 AGCAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 319659 | || | | || ||| ||||||| |||||||| | || || ||||| ||| ||| Sbjct 2234903 AAAAGGATGTCCGCCTTCTGGAGCATCGCACGTGCCATGGCCAGCTTCATGCGCCATCCT 2234962 Query 319660 CCGGAAAGAGTG 319671 || || || ||| Sbjct 2234963 CCCGACAGCGTG 2234974 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||||||||||| |||| || ||||||||||||| Sbjct 2828700 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGCCGAGGGTTCGAGCCCC 2828755 >seq32 Length=932315 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 744278 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGAGGGTTCGAGCCCC 744333 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 734353 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 734298 >seq30 Length=4005922 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 2202900 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 2202955 >seq11 Length=5521395 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 3587528 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 3587583 >seq6 Length=3939081 Score = 84.2 bits (92), Expect = 5e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||| | |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| Sbjct 1163036 TGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1162977 Query 165769 CCCC 165772 |||| Sbjct 1162976 CCCC 1162973 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1166838 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1166893 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1168326 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1168381 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1171052 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1171107 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1172542 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1172597 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1173791 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1173846 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1181007 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1180952 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1181649 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1181704 >seq1 Length=3745584 Score = 84.2 bits (92), Expect = 5e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 165717 TAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGCCCC 165772 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 1316584 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1316529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057806787220100