Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq11 260 4e-65 >seq11 Length=5521395 Score = 260 bits (288), Expect = 4e-65 Identities = 559/830 (67%), Gaps = 4/830 (0%) Strand=Plus/Minus Query 23449 ATCGACGGTTTCAAGCAGGTCGAGCAGCATGGTGAAAAACTGAAGAACTGATGCATAGTC 23508 ||| ||| | | ||||| || | ||||| ||||||||| || | || | ||||| Sbjct 3682499 ATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTC 3682440 Query 23509 GAACAGCTCTGCAGGGGTTGCTACCACGATGACGTCAGCAGCACAGACAACGTTAATAGT 23568 |||| ||| ||||| || | || | | || ||||||||||| || || ||||| || Sbjct 3682439 AAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACATTAATCGT 3682380 Query 23569 TCCCGTACCCAAGTTTGGCGCGCTGTCTATGACGATAATGTCGTAGTTATCCCATACAGA 23628 || |||||| ||| ||||||||||| || || || | || |||| || |||| Sbjct 3682379 GCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAGCAACAGT 3682320 Query 23629 CTCGATAGCAGCACGAAGCATCAGATGAGGGG-GATGAGGTAGCTTCCCCTCGGAATGGT 23687 || || || || |||||||| || || | || || || || || || | | Sbjct 3682319 TTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGGTG-GGCAGTTTACCTTCATCAAATT 3682261 Query 23688 ACTGCATCAGATCTGTTTCAATGCGGTGAAGGGCCAGGCAGCTGGGGATTATGTCGAGAC 23747 ||| | || |||||||| ||||| || ||||| ||| || || ||||| || | Sbjct 3682260 TGCCCATTAACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCC 3682201 Query 23748 CCGGCCAGCATGTTGGTTTTATCGCATATTCAGCGTTGTCGCGTTTACCCAGG-TAAAAT 23806 |||||||||| || || ||||| ||||| | | ||| | ||| |||| | || || Sbjct 3682200 CCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACATCGTC-CTTTTCCCCAAGATAGAAA 3682142 Query 23807 GGAAGCAGTGTATCGTCTGCGTGAATGTGCAAATCAGGAACGTAACCGTGGTACATAGAT 23866 || || || || || ||||| ||||| || | ||| || || | ||||| ||||| || Sbjct 3682141 GGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTGATACATTGAG 3682082 Query 23867 GCAGTCCCTTGCGGGTCGTTCCCTTCAACGAGTAGGACGCGGTGCCCTTGCAAGGCTAAC 23926 || || || || |||||||| ||||| ||||| | || || |||| | || || | Sbjct 3682081 GCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTTCAGAGCCAGA 3682022 Query 23927 CATTGCGCCTGGTGTACTGCAGATGAGGTTTTATAAACCCCTCCCTTGTGTGACATAACG 23986 || || | || || | | ||||||||| ||||| || || || || | ||| Sbjct 3682021 TCCTGAGCAAGATGAACAGAAACTGAGGTTTTGTAAACGCCACCTTTATGGGCAGCAACC 3681962 Query 23987 GAAAGTACAACCGGGTTTTTATCGTCAGGTCTTTGGTTTGGGTTACCAAACACACTCCGC 24046 | || || | || |||| | | | | | ||||||||||| ||| Sbjct 3681961 CCGATCACCGGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAACACATCACGC 3681902 Query 24047 ATATGGCTAATTTGGTCAATTGTGTAGCCAGCGCGACGTTCTACTCGGCCCCTCATCTCA 24106 ||||| ||||||| |||||||| || ||| | || | || || || || | || || Sbjct 3681901 ATATGATTAATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCCTCGAATTTCC 3681842 Query 24107 AAATCAGGAGCCGGTAGACGACCAGCTTTTTCCGCGTCTCTGATAGCCTGCGGTGTTACG 24166 | ||| || |||||| || || ||||| || || |||||||||||||| | | || Sbjct 3681841 ATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTGAGAAGAAACC 3681782 Query 24167 CCGATCAGGTCTGCAACTTCTGTTATACCCCAGCGGCGAGTAATACGACGCGCTTCCGGG 24226 || | | || || |||| ||| | |||||| || || || | |||||||||| Sbjct 3681781 CCAACTAAATCCGCTGCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCTCGCTTCCGGG 3681722 Query 24227 CTGTCATCGCCGAACTGTGCGATGGCAATAGCGCGCGTCATTTCCTGACC 24276 |||||||| |||||||| ||||| ||||| ||||||||| ||||| Sbjct 3681721 CTGTCATCATTAAACTGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 3681672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148276163776380