Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33 107 3e-18 seq23 98.7 1e-15 seq11 93.3 6e-14 >seq33 Length=4484617 Score = 107 bits (118), Expect = 3e-18 Identities = 101/126 (80%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 125449 AGGGCATCTTCTTTTCGGGTAG-TTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTC 125507 ||||| ||||||| ||||| || ||||||| | ||||| ||||| |||||||| || ||| Sbjct 716634 AGGGCGTCTTCTTCTCGGGAAGCTTTTGCG-CGATCTTCTGGCTGAAGAAGCGTGGCCTC 716576 Query 125508 ATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGAC 125567 |||||||| ||||| | ||||||| | || || || |||||||| || ||||| ||| Sbjct 716575 ATGCCCGGCCTGACCTTCTCTAACGAGATGATCTCGCGCGACGAGGGGCTGCACTGCGAC 716516 Query 125568 TTTGCC 125573 || ||| Sbjct 716515 TTCGCC 716510 >seq23 Length=3983565 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCG-CAACAGCAA 97261 ||||| ||||| || || || ||||| || |||||||| | ||| | | ||| ||||| Sbjct 2106703 CAGGTGGAGACAGGCACCCCTTACATGCTGTACAAGGACGC-GTGCAACTTCAAGAGCAA 2106645 Query 97262 CCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGC 97321 ||| || |||||||||||||| |||||| || |||||||| || || |||||| | Sbjct 2106644 CCAGAAGAACCTGGGCACCATCAAGTCCTCCAACCTCTGCACGGAGATCGTGGAGTACAC 2106585 Query 97322 CTCTCCGGACGAG 97334 | ||||||||||| Sbjct 2106584 CGCTCCGGACGAG 2106572 >seq11 Length=5521395 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 97203 CAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATC-GCAACAGCAA 97261 ||||| |||||||| || |||||||| || | |||||| | ||| | | |||| ||||| Sbjct 2274772 CAGGTTGAGACTGGCACGCCGTACATGCTGTTCAAGGACGC-GTGCAACAGCAAGAGCAA 2274830 Query 97262 CCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGC 97321 ||| ||||||||||||||||| |||||| || |||||||| || | |||||| | Sbjct 2274831 CCAGAAGAACTTGGGCACCATCAAGTCCTCCAACCTCTGCACGGAGATCATCGAGTACAC 2274890 Query 97322 CTCTCCGGACGAG 97334 | || |||||| Sbjct 2274891 CGACCCCGACGAG 2274903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741047435685200