Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq665 91.5 1e-13 >seq8 Length=4529048 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| |||| || || | ||||||| Sbjct 418895 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 418836 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 418835 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 418776 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 418775 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 418716 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 418715 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 418686 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| |||||||||||| || || ||||| |||| || || | ||||||| Sbjct 420470 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420411 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 420410 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420351 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 420350 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420291 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 420290 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 420261 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 419123 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 419064 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 419063 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 419004 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 419003 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 418944 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 418943 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 418914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 420698 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420639 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 420638 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420579 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 420578 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420519 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 420518 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 420489 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 420926 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420867 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | ||||| ||||| Sbjct 420866 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420807 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 420806 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420747 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || | || ||||| || || ||||| Sbjct 420746 ACCCGTGAGGGTCTTGACGAAGATCTGCAT 420717 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 421154 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 421095 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || ||| | || || | |||||| ||| ||| | ||||| ||||| Sbjct 421094 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 421035 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || || |||||| || | ||| ||||| || Sbjct 421034 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420975 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 420974 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 420945 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| ||||||||||| || || ||||| |||| || || | ||||||| Sbjct 419352 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 419293 Query 18892 CAGCTGTTTACCCGCATAAAT-AAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGG 18950 |||||| || || || | || | | | |||||| ||| ||| | ||||| ||||| Sbjct 419292 CAGCTGCTTGCCGGCGAAGATCAGGCCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCT 419233 Query 18951 CAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTT 19010 || ||||| || || | ||| || || ||||||| || | ||| ||||| | Sbjct 419232 GGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCT 419173 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 | || || | || ||||| || || ||||| Sbjct 419172 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 419142 >seq665 Length=197211 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| |||| || || | ||||||| Sbjct 106872 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 106813 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 106812 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 106753 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| ||||||| |||| || || || || Sbjct 106752 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTT 106693 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 106692 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 106663 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || ||||| |||| | || | ||||||| Sbjct 107328 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107269 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 107268 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 107209 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| ||||||| |||| || || || || Sbjct 107208 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTT 107149 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 107148 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 107119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||||| || |||||||| || || ||||| |||| | || | ||||||| Sbjct 107100 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107041 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 107040 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 106981 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| |||||| |||| || || || || Sbjct 106980 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTT 106921 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 106920 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 106891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || || ||||| |||| || || | ||||||||||||| Sbjct 107550 GTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTG 107491 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || || | || || | |||||| ||| ||| | |||||| ||||| || || Sbjct 107490 CTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 107431 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || || | ||| || ||| |||||| |||| || || || || || || Sbjct 107430 CTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGT 107371 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 | || ||||| || || ||||| Sbjct 107370 GAGGGTCTTGACGAAGATCTGCAT 107347 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| |||| | || | ||||||| Sbjct 106073 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 106014 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| || || || | || || | |||||| ||| ||| | |||||| ||||| Sbjct 106013 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 105954 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||||| || || | ||| || ||| |||||| |||| || || || || Sbjct 105953 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTT 105894 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || ||||| || || ||||| Sbjct 105893 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 105864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566383190380