Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq665 91.5 1e-13 seq8 89.7 4e-13 >seq665 Length=197211 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| || | || || |||||||||||||| Sbjct 106865 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGC 106806 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | ||||||||| ||| || | | ||||||||| || ||| Sbjct 106805 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 106746 Query 48644 TGCTTGATAGACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | || | || || |||| || |||| |||| || || || || || || Sbjct 106745 TGCTTCA-CGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGT 106687 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||| || || || || |||||||| Sbjct 106686 GAGGGTCTTGACGAAGATCTGCAT 106663 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/192 (72%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||| || |||||||| || | || || || |||||||||||||||| ||| || | Sbjct 105323 CCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 105265 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| || | | ||||||||| || |||||||| | | | Sbjct 105264 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCC 105206 Query 48656 G-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || |||| || |||| |||| || || || ||||| ||||| || || || Sbjct 105205 GTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTACCCGTGAGGGTCTTGAC 105146 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 105145 GAAGATCTGCAT 105134 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || |||||||||||||||| ||| || Sbjct 107310 CTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGA 107252 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| ||| || | | ||||||||| || |||||||| | | Sbjct 107251 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CG 107193 Query 48654 ACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 || | || || |||| || |||| |||| || || || || || ||||| || || Sbjct 107192 CCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTG 107133 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 107132 ACGAAGATCTGCAT 107119 Score = 86.0 bits (94), Expect = 5e-12 Identities = 135/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | || || |||||||||||||||| ||| || | | Sbjct 106281 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 106222 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | | ||||||||| ||| || | | ||||||||| || |||||||| | | || Sbjct 106221 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 106163 Query 48657 -CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || |||| || |||| |||| || || || || || ||||| || || || Sbjct 106162 TCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACG 106103 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 106102 AAGATCTGCAT 106092 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || |||||||||||||||| ||| || Sbjct 106055 CTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGA 105997 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| ||| || | | ||||||||| || |||||||| | | Sbjct 105996 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CG 105938 Query 48654 ACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 || | || || |||| | |||| |||| || || || || || ||||| || || Sbjct 105937 CCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTG 105878 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 105877 ACGAAGATCTGCAT 105864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | || || || |||||||||||||||| ||| || Sbjct 107082 CTCCTTCTGGATGTTGTAGTCCGA-AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGA 107024 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||| ||| || | | ||||||||| || |||||||| | | Sbjct 107023 AGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CG 106965 Query 48654 ACG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 || | || || |||| | |||| |||| || || || || || ||||| || || Sbjct 106964 CCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTG 106905 Query 48713 ACAAAAATCTGCAT 48726 || || |||||||| Sbjct 106904 ACGAAGATCTGCAT 106891 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 107538 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 107479 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | ||||||||| ||| || | | ||||||||| || |||||||| | | Sbjct 107478 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 107420 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || |||| | |||| |||| || || || || || ||||| || || | Sbjct 107419 CGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGA 107360 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 107359 CGAAGATCTGCAT 107347 >seq8 Length=4529048 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 48537 CCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAA 48596 |||| || |||||||| || | || || |||||||||||||||| ||| || | | Sbjct 419560 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 419501 Query 48597 TTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG 48656 | ||||||||||| ||| || | || ||||||||| || |||||||| | | || Sbjct 419500 TCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCG 419442 Query 48657 -CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | || || || | || |||| || | || ||||| || || ||||| || || || Sbjct 419441 TCGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACG 419382 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 419381 AAGATCTGCAT 419371 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 418877 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 418818 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | | Sbjct 418817 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 418759 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || || | | |||| || | || ||||| ||||| ||||| || || | Sbjct 418758 CGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 418699 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 418698 CGAAGATCTGCAT 418686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 419105 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 419046 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | | Sbjct 419045 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 418987 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || || | | |||| || | || ||||| ||||| ||||| || || | Sbjct 418986 CGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 418927 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 418926 CGAAGATCTGCAT 418914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 420452 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 420393 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | | Sbjct 420392 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 420334 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || || | | |||| || | || ||||| ||||| ||||| || || | Sbjct 420333 CGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 420274 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 420273 CGAAGATCTGCAT 420261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 420680 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 420621 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | | Sbjct 420620 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 420562 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || || | | |||| || | || ||||| ||||| ||||| || || | Sbjct 420561 CGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 420502 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 420501 CGAAGATCTGCAT 420489 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || | || || |||||||||||||||| ||| || | Sbjct 420908 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 420849 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | | Sbjct 420848 GATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 420790 Query 48655 CG-CTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || | || || || | | |||| || | || ||||| ||||| ||||| || || | Sbjct 420789 CGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGA 420730 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 420729 CGAAGATCTGCAT 420717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244679821270