Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq11 311 3e-80 >seq11 Length=5521395 Score = 311 bits (344), Expect = 3e-80 Identities = 597/875 (68%), Gaps = 10/875 (1%) Strand=Plus/Minus Query 27720 TTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAACCGCCTAAATCAACGGTTTTTAGTAG 27779 |||||| |||| | ||||| | |||||||| || | ||||||| | || || || Sbjct 3682541 TTTGGTAAGCAAAATACGTACACCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAG 3682482 Query 27780 GTCCAGAAGCATGGTGAAGAACTGCAGAACGGATGAATAATCAAATAGCTCTGCAGGGGT 27839 || ||||||| ||| |||||||| |||| | || ||||| | ||| ||||| || Sbjct 3682481 ATCACGAAGCATATCGAAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGT 3682422 Query 27840 AGCTACGACAATAATATCGGCAGCACAAACAACATTAATCGTCCCTGTTCCGAGGTTAGG 27899 | || | | | ||| |||||||| || ||||||||||| || | || |||||||| Sbjct 3682421 GGGAACAATCAGCACATCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGG 3682362 Query 27900 AGCGCTATCAATAACGATAATGTCATAGTTATCCCATACGGATTCTATAGCAGCCCGTAG 27959 ||||| |||||||| || | ||||||| || || | ||| || || || || Sbjct 3682361 CGCGCTGTCAATAACTATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAG 3682302 Query 27960 CATCAGGTGAGG--CGGATGAGGTAGTTTTCCTTGGGCGTGGTATT---GCATCAGGTCC 28014 ||||||||| || ||| || || ||||| |||| | | ||| ||| | || Sbjct 3682301 CATCAGGTGTGGATCGG-TG-GGCAGTTTACCTT---CATCAAATTTGCCCATTAACTCA 3682247 Query 28015 GTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGATAATGTCCAGACCTGGCCAGCAGGTC 28074 ||||| |||||||| || |||| ||| || |||||||| || || |||||||| || Sbjct 3682246 GTTTCAATACGGTGCAGAGCCAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTG 3682187 Query 28075 GGCTTTATAGCGTATTCCGCATTATCACGCTCACCAAGGTAAAACGGGAGCAAAGTATCA 28134 |||||||| || || ||| || || ||||| || || || || | ||| || Sbjct 3682186 GGCTTTATTGCATAAGTGACATCGTCCTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCT 3682127 Query 28135 TCGGCGTGAATGTGCAAATCAGGCACATAGCCATGATACATAGAGGCGGTTCCCTGCGGA 28194 || || ||||| || | ||| || || | || |||||||| ||||| |||||||| || Sbjct 3682126 TCTGCATGAATATGAAGATCTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGG 3682067 Query 28195 TCATTACCTTCAATGAGTAGAACTCGGTGACCCTGTAAGGCTAACCATTGAGCTTCATGT 28254 || |||||||| | ||| | ||| || | |||| | || | ||||| ||| Sbjct 3682066 TCGTTACCTTCCACGAGCAAAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGA 3682007 Query 28255 ACTGCAGATGAGGTTTTATAAACGCCACCTTTGTGTGACATAACAGCTAAAACGGCTGGA 28314 || | | ||||||||| |||||||||||||| || | ||| | | || | |||| Sbjct 3682006 ACAGAAACTGAGGTTTTGTAAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGA 3681947 Query 28315 TTTTTATCGGCTGGCCGTTGATTAGGATTACCGAAAATGTTCCGCATATGGCTAATTTGG 28374 | || | | ||| | | |||| || | | |||||||| ||||||| Sbjct 3681946 AATACGTCTTCAGCACGTCGCAATCGCGTACCAAACACATCACGCATATGATTAATTTGT 3681887 Query 28375 TCGATGGTATAGCCAGCACGACGTTCGACGCGGCCACGCAATTCAAAATCAGGTGGCGGT 28434 || || ||||| ||| |||| | || || || || || | ||| | ||| || ||||| Sbjct 3681886 TCAATTGTATAACCAACACGTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGT 3681827 Query 28435 AACCGCCCATTCTTCTCAGCATCTCTAATCGCTTGCGGTGAAACACCGATTAAATCAGCA 28494 | ||||| ||||| |||||||| || || || | ||||| || | |||||| || Sbjct 3681826 AGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCT 3681767 Query 28495 ACCTCGGTTATCCCCCAGCGACGAGTAATCTTACGTGCTTCAGGGCTATCATCACCAAAT 28554 | || ||| | |||||| || || || || | ||||| ||||| |||||| ||| Sbjct 3681766 GCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCATTAAAC 3681707 Query 28555 TGCGCTATGGCAATGGCTTGCGTCATCTCTTGTCC 28589 || || ||||| || || | |||||| || || || Sbjct 3681706 TGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 3681672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164999111569620