Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 seq665 93.3 4e-14 >seq8 Length=4529048 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 421154 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 421095 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| ||||||| | | ||||| || || || ||||| || ||||| | Sbjct 421094 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 421035 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 421034 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420975 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 420974 GCCCGTGAGGGTCTTGACGAAGATCTGCATGC 420943 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 418895 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 418836 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 418835 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 418776 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 418775 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 418716 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 418715 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 418684 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 419123 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 419064 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 419063 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 419004 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 419003 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 418944 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 418943 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 418912 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 420470 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420411 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 420410 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420351 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 420350 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420291 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 420290 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 420259 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 420698 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420639 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 420638 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420579 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 420578 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420519 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 420518 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 420487 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 420926 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420867 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 420866 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420807 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| || Sbjct 420806 GATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTT 420747 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || ||||||||||||| Sbjct 420746 ACCCGTGAGGGTCTTGACGAAGATCTGCATGC 420715 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| ||||| ||||| || | ||| || || || ||| | ||||| Sbjct 419352 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 419293 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTT-TGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 |||||| || ||| | ||||| | | ||||| || || || ||||| || ||||| | Sbjct 419292 CAGCTGCTTGCCGGCGAAGATCAGGCCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCT 419233 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||| ||| || ||| ||||| | | || ||||| | |||||||| | Sbjct 419232 GGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCT 419173 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || || || || || || ||||||||||||| Sbjct 419172 TGCCCGTGAGGGTCTTGACGAAGATCTGCATGC 419140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| |||| ||||| || || || || || |||||| Sbjct 418028 TCCTCCAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCCTCTTTG 417969 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| || ||| ||||| | | || ||||| | |||||| Sbjct 417968 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATG 417909 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || || || ||||| || ||||| || |||||| Sbjct 417908 GTCTTGCCCGTAAGTGTCTTCACGAAAATCTGC 417876 Score = 89.7 bits (98), Expect = 5e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| || | ||||| || || || ||||| || ||| Sbjct 419525 TCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTG 419466 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| || ||| ||||| | | || ||||| | |||||| Sbjct 419465 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATG 419406 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || || || || ||||||||||||| Sbjct 419405 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGC 419369 >seq665 Length=197211 Score = 93.3 bits (102), Expect = 4e-14 Identities = 113/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| | | |||||| || || || ||||| || ||| Sbjct 104618 TCCTCCAGCTGCTTGCCCGCGAAGATCAGACGTTGCTGGTCGGGGGGGATACCCTCCTTG 104559 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||| ||| || ||| ||||||| | |||||||| | |||||| Sbjct 104558 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCAGAAGGCTCGACGTCGAGGGTGATG 104499 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 || || || || || || || ||||||||||||| Sbjct 104498 GTCTTACCCGTGAGGGTCTTGACAAAGATCTGCA 104465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284083377200