Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq820 138 2e-28 seq729 136 6e-28 seq27 127 3e-25 >seq820 Length=761978 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||||| || |||||||| || ||||||||||| || || Sbjct 285872 CGCCAAGCGCCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 285931 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 285932 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGAC 285991 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| ||| |||| || || || ||| || || Sbjct 285992 CCGGGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCTGTCACCTACACGGA 286051 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 286052 GCACGCTCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 286111 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 286112 CCGCACCCTCTACGGTTTCGG 286132 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||||| || |||||||| || ||||||||||| || || Sbjct 292179 CGCCAAGCGCCACCGCAAGGTGCTTCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 292120 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 292119 CCGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGAC 292060 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| ||| |||| || || || ||| || || Sbjct 292059 CCGGGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGCGACTCTGTCACCTACACGGA 292000 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 291999 GCACGCTCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 291940 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 291939 CCGCACCCTCTACGGTTTCGG 291919 >seq729 Length=96744 Score = 136 bits (150), Expect = 6e-28 Identities = 186/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || || || |||||||| || ||||||||||| || || Sbjct 55302 GCCAAGCGTCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATT 55243 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 55242 CGCCGTCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACC 55183 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | |||||| ||| ||| |||| ||| | || ||| |||||| Sbjct 55182 CGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTCACCTACACCGAG 55123 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| || || ||||||| | || ||||| | || || || ||| Sbjct 55122 CACGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTATGCCCTCAAGCGCCAGGGC 55063 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 55062 CGCACCCTCTACGGTTTCGG 55043 >seq27 Length=4309624 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || || || |||||||| || ||||||||||| || ||| Sbjct 141317 GCCAAGCGTCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATC 141376 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 141377 CGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACC 141436 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | ||| | |||||| ||| ||| |||| ||| | | ||| |||||| Sbjct 141437 CGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTGACCTACACCGAG 141496 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| || || ||||||| | || || || | || || || ||| Sbjct 141497 CACGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGC 141556 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 141557 CGCACCCTCTACGGTTTCGG 141576 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||| ||||||||||| ||||| Sbjct 183804 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGC 183745 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| |||| ||| | |||| || |||| || | || | ||| | ||| Sbjct 183744 GGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGACCCGCGGGGTGCTCAAGGTGTTC 183685 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| | | ||| ||||||||||| || ||||| || Sbjct 183684 CTCGAGAACGTCATCCGTGACTCGGTGACCTACACCGAGCACGCCCGCCGGAAGACCGTG 183625 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | || || || | || || || ||||| | | || ||||| || Sbjct 183624 ACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGGCCGCACCCTCTACGGTTTCGG 183566 Score = 120 bits (132), Expect = 5e-23 Identities = 194/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 575439 CGCCAAGCGCCACCGCAAGGTACTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 575498 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 575499 CCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGAC 575558 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| ||| |||| ||| | | || ||||| Sbjct 575559 CCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTGACGTACACCGA 575618 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 575619 GCACGCCCGCCGCAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 575678 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 ||| | | || ||||| || | ||| || | |||| Sbjct 575679 CCGCACCCTCTACGGTTTCGGCGGCTAAGCTCATCATCA 575717 Score = 120 bits (132), Expect = 5e-23 Identities = 194/279 (70%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 596077 CGCCAAGCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 596018 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 596017 CCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGAC 595958 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| ||| |||| ||| | | || ||||| Sbjct 595957 CCGCGGCGTGCTCAAGGTGTTCCTCGAGAACGTCATCCGTGACTCGGTGACGTACACCGA 595898 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 595897 GCACGCCCGCCGGAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 595838 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 ||| | | || ||||| || | ||| || | |||| Sbjct 595837 CCGCACCCTCTACGGTTTCGGCGGCTAAGCTCATCATCA 595799 Score = 114 bits (126), Expect = 2e-21 Identities = 182/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 552064 CGCCAAGCGCCACCGCAAGGTACTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 552005 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| ||||| || || |||||| |||| ||| | |||| || |||| Sbjct 552004 CCGCCGCCTGGCTCGCCGTGGCGGTGTGAAGCGTATCTCGGGACTCATCTACGAGGAGAC 551945 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | |||||| ||| || |||| ||| | | ||| ||||| Sbjct 551944 CCGCGGCGTGCTCAAGGTGTTCCTCGAGAATGTCATCCGTGACTCGGTAACCTACACCGA 551885 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || ||||| || || ||||||| | || || || | || || || || Sbjct 551884 ACACGCCCGCCGCAAGACCGTGACGGCCATGGACGTGGTGTACGCCCTCAAGCGCCAGGG 551825 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 551824 CCGCACCCTCTACGGTTTCGG 551804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074038830110