Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq665 107 2e-18 seq8 96.9 3e-15 >seq665 Length=197211 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 107347 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 107406 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 107407 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107466 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 107467 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 107526 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | || | || ||||||| || Sbjct 107527 ATCCAGAAGGAGTCGACCCTGCACCTTGTCCTCCGCCTGCGCGGTGG 107573 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| ||| ||||||| || ||||| | || Sbjct 105134 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTCTCGACGTGGAGCCTTCC 105193 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 105194 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 105253 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 105254 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAAC 105313 Query 22399 ATTCAAAA 22406 || || || Sbjct 105314 ATCCAGAA 105321 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 105864 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 105923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 105924 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 105983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 105984 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAAC 106043 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 106044 ATCCAGAAGGAGTCGACC 106061 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 106663 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 106722 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 106723 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 106782 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 106783 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 106842 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 106843 ATCCAGAAGGAGTCGACC 106860 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 106891 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 106950 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 106951 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107010 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 107011 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAAC 107070 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 107071 ATCCAGAAGGAGTCGACC 107088 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 107119 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 107178 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 107179 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107238 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 107239 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAAC 107298 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 107299 ATCCAGAAGGAGTCGACC 107316 Score = 100 bits (110), Expect = 2e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || ||| ||||||| || ||||| | || Sbjct 106092 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 106151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || ||||||||||| || || || || || Sbjct 106152 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 106211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 106212 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 106271 Query 22399 ATTCAAAA 22406 || || || Sbjct 106272 ATCCAGAA 106279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 |||| || ||||| || || | || ||||| || |||| || || || || | | | Sbjct 104465 TGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGACGTCGAGCCTTCTG 104524 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | |||| | || || || || || |||||||||||||| || ||||| || | Sbjct 104525 ACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGC 104584 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 ||||||| || || || ||||| ||| | ||||| |||||| | || || ||||||| Sbjct 104585 AACGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAACA 104644 Query 22400 TTCAAAA 22406 | || || Sbjct 104645 TCCAGAA 104651 >seq8 Length=4529048 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | | Sbjct 418914 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418973 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 418974 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419033 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 419034 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 419093 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 419094 ATCCAGAAGGAGTCTACC 419111 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | | Sbjct 420489 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420548 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 420549 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420608 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 420609 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420668 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 420669 ATCCAGAAGGAGTCTACC 420686 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | | Sbjct 420717 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420776 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 420777 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420836 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 420837 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420896 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 420897 ATCCAGAAGGAGTCTACC 420914 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 420945 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCGTCG 421004 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 421005 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 421064 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 421065 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 421124 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 421125 ATCCAGAAGGAGTCTACC 421142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | | Sbjct 418686 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418745 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 418746 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 418805 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 418806 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 418865 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 418866 ATCCAGAAGGAGTCTAC 418882 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || |||| || || ||||| | | Sbjct 420261 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420320 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 420321 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420380 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 420381 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420440 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 420441 ATCCAGAAGGAGTCTAC 420457 Score = 87.8 bits (96), Expect = 2e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 419371 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCG 419430 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 419431 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419490 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || |||||||| ||| | ||||| ||||||| | || || |||||| Sbjct 419491 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 419550 Query 22399 ATTCAAAA 22406 || || || Sbjct 419551 ATCCAGAA 419558 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || ||||| | | Sbjct 419142 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCG 419201 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | |||| | || || || || || |||||||||||||| || || || || Sbjct 419202 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419261 Query 22339 CAAC-GTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || || || |||||||| ||| | ||||| ||||||| | || || ||||| Sbjct 419262 CAGCGGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAA 419321 Query 22398 CATTCAAAAAGAATCCACC 22416 ||| || || || || ||| Sbjct 419322 CATCCAGAAGGAGTCTACC 419340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721503397550