Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 2e-15 seq6 91.5 3e-13 seq32 89.7 1e-12 seq30 89.7 1e-12 seq11 89.7 1e-12 seq1 89.7 1e-12 >seq2 Length=9289656 Score = 98.7 bits (108), Expect = 2e-15 Identities = 128/176 (73%), Gaps = 12/176 (7%) Strand=Plus/Minus Query 280185 AATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG-----ACC-CAGGCC 280238 || || ||||| ||||| ||| | ||||| || |||||||||||| ||| ||| || Sbjct 2234490 AACGGCGCGGGGAAGTCGACCATGATCAAGGTGCTGACTGGCGAGGTTGTACCGCAGACC 2234431 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 || ||| ||| ||||||||| ||| | |||||| | || ||||| || Sbjct 2234430 GGCGA------CGTGTGGCGGCATCCCAATGCGCGAGTAGCTTACTTGGCGCAGCATGCC 2234377 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 ||||||||||||||| ||||| || ||| ||| || ||| | ||||| | |||||| Sbjct 2234376 TTCCACCACATCGAGGACCACATGAACAAGACCCCGAACGAGTACATCCGGTGGCG 2234321 >seq6 Length=3939081 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| | |||||||||||||||||||| ||||||||||||| ||||||| |||||||| Sbjct 1181640 TAGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGA 1181699 Query 142562 GCCCC 142566 ||||| Sbjct 1181700 GCCCC 1181704 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1166830 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1166889 Query 142563 CCCC 142566 |||| Sbjct 1166890 CCCC 1166893 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1168318 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1168377 Query 142563 CCCC 142566 |||| Sbjct 1168378 CCCC 1168381 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1171044 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1171103 Query 142563 CCCC 142566 |||| Sbjct 1171104 CCCC 1171107 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1172534 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1172593 Query 142563 CCCC 142566 |||| Sbjct 1172594 CCCC 1172597 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1173783 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1173842 Query 142563 CCCC 142566 |||| Sbjct 1173843 CCCC 1173846 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1181015 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1180956 Query 142563 CCCC 142566 |||| Sbjct 1180955 CCCC 1180952 Score = 87.8 bits (96), Expect = 4e-12 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| Sbjct 1163028 TAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAGCCCC 1162973 >seq32 Length=932315 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 734361 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 734302 Query 142563 CCCC 142566 |||| Sbjct 734301 CCCC 734298 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 |||||||||||||||||||| ||||| ||||||| ||||||| ||||||||||||| Sbjct 744278 TAGCTCAGTCGGTAGAGCGCAAGACTTTTAATCTTGTGGTCGAGGGTTCGAGCCCC 744333 >seq30 Length=4005922 Score = 89.7 bits (98), Expect = 1e-12 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 142499 AGAT-AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGT 142557 |||| |||| | |||||||||||||||||||| ||||||||||||| ||||||| |||| Sbjct 2202887 AGATCAGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGT 2202946 Query 142558 TCGAGCCCC 142566 ||||||||| Sbjct 2202947 TCGAGCCCC 2202955 >seq11 Length=5521395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 3587520 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 3587579 Query 142563 CCCC 142566 |||| Sbjct 3587580 CCCC 3587583 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | ||||||||| |||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 3588812 AGCCGGAGTAGCTCAGTTGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 3588871 Query 142563 CCCC 142566 |||| Sbjct 3588872 CCCC 3588875 >seq1 Length=3745584 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| | |||||||||||||||||||| ||||||||||||| ||||||| ||||||||| Sbjct 1316592 AGCCGGAGTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCGAGGGTTCGAG 1316533 Query 142563 CCCC 142566 |||| Sbjct 1316532 CCCC 1316529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027820075168070