Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 122 2e-22 seq33 109 1e-18 seq14 107 4e-18 seq16 105 1e-17 seq475 104 4e-17 seq11 102 2e-16 >seq23 Length=3983565 Score = 122 bits (134), Expect = 2e-22 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||||| ||||| ||||| | ||||||||| ||||||| ||||||| ||||| || Sbjct 2109265 CTTGAGCGTGTCGTAGATGCCGTTGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCACGA 2109324 Query 245380 GGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 |||| ||||||||||||| ||| | ||||||||| |||||| ||||||| || ||| | Sbjct 2109325 CGACATCTGGGGCTTGGGGGTGCCGGCGTTGAACAGGGTGGGGGTGGCGTGCGTGAAG-A 2109383 Query 245440 GCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCT 245498 || || ||| | || ||||||||| || || |||||||| ||| |||||| Sbjct 2109384 GCCTCTGCGACATGAGGTCGTACGTCTCGATCACCTTGTCGATGTCGTCCTTGTGGATGC 2109443 Query 245499 GCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTC 245535 || | ||| | ||||| ||||||| ||| |||| Sbjct 2109444 CCACCG-ACACGCGCATGATCATGTGCTGCGGCCTCTC 2109480 Score = 100 bits (110), Expect = 5e-16 Identities = 93/117 (79%), Gaps = 1/117 (1%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| |||| |||||||| || ||||| ||||||||||| | ||||||||||| Sbjct 2106570 ACCTCGTCCGGAGCGGTGTACTCCACGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTG 2106629 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG-AAGGG 244821 ||||||| || || ||| |||| |||||| ||||||||||| |||||| ||||| Sbjct 2106630 CCCAGGTTCTTCTGGTTGCTCTTGAAGTTGCACGCGTCCTTGTACAGCATGTAAGGG 2106686 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/134 (76%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCT---GCTC 245064 |||||||||||||||||||||||| | ||| | ||| |||||||| | | || |||| Sbjct 2108035 CTGCATGAAGAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTCGCGCGCTCGAGCTC 2108094 Query 245065 GTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTC 245124 || ||| ||||||| |||| ||||| || | | || |||| ||||||| ||||| Sbjct 2108095 GT---TGCCGTGGTTCTTCTTCAGGTCCAAGAACGCCACGATGTCGGCGTGCCACGGCTC 2108151 Query 245125 CATGTAGACAGCGA 245138 || ||| || |||| Sbjct 2108152 CAGGTACACGGCGA 2108165 >seq33 Length=4484617 Score = 109 bits (120), Expect = 1e-18 Identities = 154/213 (72%), Gaps = 5/213 (2%) Strand=Plus/Minus Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGTCG 42785 ||||| ||||||||||||| ||| | | ||||||||||| ||| || || || Sbjct 716634 AGGGCGTCTTCTTCTCGGGAAGCTTTTGCGCGATCTTCTGGCTGAAGAAGCGTGGCCTC- 716576 Query 42786 ATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGAC 42845 |||||||| || |||||||| ||||| | ||| | |||||||||||||| | ||| Sbjct 716575 ATGCCCGGCCTGACCTTCTCTAACGAGATGATCTCGCGCGACGAGGGGCTGCACTGCGAC 716516 Query 42846 TTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGG 42905 || ||||||| |||||| | | |||| | |||| ||| |||| ||| | Sbjct 716515 TTCGCCTGCCAGCTGTTCGC---CTCCCTCGAGAACAAACCCAGCCGGGAGACGGTGATG 716459 Query 42906 GCCATCATCACGGAGGCCGTGGAGATCGAGAAG 42938 |||||| | | |||||| |||||| |||||||| Sbjct 716458 GCCATCGTGAGGGAGGCTGTGGAGGTCGAGAAG 716426 >seq14 Length=3614499 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 ||||| |||| | || |||| | ||| | ||| || ||||| || |||||||||| Sbjct 1008487 AGAACTTGGCAAGCAACTTCAGCAGCGAGATCCAGCTCTCGGAGGCCCGGTGCTTCTACG 1008546 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGT 42579 |||||||||| ||||| |||||| | ||| ||||||||| | ||| || |||||| Sbjct 1008547 GCTTCCAGATCGCCATCGAGAACATCCACAGCGAGGTGTACAGCCTCCTGATCGACACGT 1008606 Query 42580 ACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC 42638 || || ||| ||| |||| | | || ||||| |||||||||||| | |||||| Sbjct 1008607 ACGTCAAGGACGCCGCCGAGAAGACCCACCTCTTCAACGCCATGGAGACGGTCCCCTGC 1008665 Score = 104 bits (114), Expect = 4e-17 Identities = 151/213 (71%), Gaps = 3/213 (1%) Strand=Plus/Plus Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 ||||||||||||| || || |||| | || | |||||||| ||| || | | || Sbjct 1009264 AGGGCATCTTCTTTTCCGGAAGCTTCTGCGCCGTGTTCTGGCTGAAGAAGCGAGGGCTGA 1009323 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACT 42846 ||||||| || |||||||||||||||||||||| | || ||||| || || | |||| Sbjct 1009324 TGCCCGGGCTGTGCTTCTCGAACGAACTCATCAGCCGAGATGAGGGTCTCCACACCGACT 1009383 Query 42847 TTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGG 42906 | || ||||| |||||| || | || | |||||| | |||||||| || Sbjct 1009384 TCGCGTGCCTGCTGTTC---AGAAAACTGGTGAACAAGCTGCCCGTCGAGCGGGTGGCGG 1009440 Query 42907 CCATCATCACGGAGGCCGTGGAGATCGAGAAGG 42939 ||||| || || ||||| |||||||||| Sbjct 1009441 AGATCATTTGCGACGCGGTGGACATCGAGAAGG 1009473 >seq16 Length=8064047 Score = 105 bits (116), Expect = 1e-17 Identities = 475/735 (65%), Gaps = 62/735 (8%) Strand=Plus/Minus Query 244406 TAGATGGTCTCGAAGATCATCTTGTTCAT-GTCGCGGGC--CT-TGCCGCAGGTGAAGGG 244461 ||||| |||||||| ||| ||||||| ||||| | | || || | || ||||| Sbjct 4537156 TAGATCGTCTCGAAAATCTGTTTGTTCAGCGTCGCTGCCTCCTCTGACTCA----AAGGG 4537101 Query 244462 GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTG 244521 || ||||||| ||||||||||||| |||| |||| ||||| | ||| ||| | ||| Sbjct 4537100 GAATCCCATCACCATGAAGACGTCGTGCAGTGCCTGAACGCCCAGCCCGCAGGGGCGGTG 4537041 Query 244522 TCGCTTGTTGG---AGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCT 244577 | |||||| ||| |||| | ||| | ||||||||||||| | || ||||||| Sbjct 4537040 CTTCATGTTGGACAAGCTGCAT-TCCTCG---AGGGGGTAAAAGTTGGCATCAATCACCT 4536985 Query 244578 TGTTGAGGTTGCGGGTGATC----ATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTA- 244632 |||||||||| ||||| | || || | | | || ||| |||||| | Sbjct 4536984 TGTTGAGGTT---CTTGATCGCCTGTTTGGCCGTC-TTGTGAAGACGCTCGAAGTCGAAC 4536929 Query 244633 --CTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || || || | | || || |||||| ||| || ||| ||| Sbjct 4536928 GTCTTGTCCGGCTTCACG----TG-----CCTCAC---------GAGATTGATGCTCGCC 4536887 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 |||||||||||||| | ||||||| | | ||| || | | ||| | |||||||| Sbjct 4536886 AGGTTGCAGACGGCAATCTCCTCCTTGGACGAGTATTGAATCACCTCTGCACAGAGGTTC 4536827 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 | |||||| || || ||||| || ||| |||||| ||||| | ||| ||| | Sbjct 4536826 GACGAGCGGATGGTACCAAGATGCTGCTGGTTGCTCTTGGCATTGCACGAGTCTTTGAAC 4536767 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 | | | |||||||| ||||| | ||| | | | || | |||| || | Sbjct 4536766 AAATAGTACGGCCCCCCTGTCTCTATCTGAGACTCCACCACCTTCGCGAAGAGCGTCCGA 4536707 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTA--GCGGGTGTACAGGGCCTCGA 244928 ||||||| ||| ||| | |||| || | ||||| | || | || |||| Sbjct 4536706 GCCTTGATTGTCTTGC---CGATGCCGTCGGATTCGTATTTCTCGTAGGCTCGG--TCGA 4536652 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGG-CCGGGGC-ACGACGCCGGGCACATGAGACTCCA 244986 | |||| ||| || ||| ||| ||||||| || | ||| | | || |||| Sbjct 4536651 AGTCGGCGCCGTGGAGATCGATGAGGTCCGGGGCGTCG--GACGGAGAGAGAAGCGTCCA 4536594 Query 244987 CTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAG 245046 |||||| || ||||||| | |||||||| | ||||| || ||| || | | |||||| Sbjct 4536593 ATCGCCGTCGGCCTTGACTCGGTGCATGAACAAGTCGGAGACCCACAGCCCATAGAAGAG 4536534 Query 245047 GTCCCTGG---TCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || | | || | |||||| ||| ||||||| ||| |||| || || | Sbjct 4536533 ATCGCGCGCTCTCATGAGCTCGT---TGCCGTTGTTCTTTTTCAAGTCCAGGAACTCCAG 4536477 Query 245104 GACGTCGACGTGCCA 245118 | |||| ||||||| Sbjct 4536476 TATGTCGGCGTGCCA 4536462 >seq475 Length=407929 Score = 104 bits (114), Expect = 4e-17 Identities = 110/143 (77%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 244682 ACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTG 244741 |||||| | ||||||||||| |||||||| | | || ||||||| || ||||| ||| Sbjct 61100 ACGCTGCCGAGGTTGCAGACCGCCACCTCGCCGGGGTCCGTGTACTCCACGATCTCCGTG 61159 Query 244742 CAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCG 244801 || ||||| | ||| |||||| |||||||||| ||| ||| |||| ||||||||| Sbjct 61160 CACAGGTTGGAGGACTGGATGGTCCCCAGGTGCTTGTGGTTGCTCTTGCGGTTGCAGGCA 61219 Query 244802 TCCTTGTAGAGCATGAAG-GGCC 244823 |||| ||||| |||| |||| Sbjct 61220 TCCT--GCGAGCAAGAAGAGGCC 61240 Score = 89.7 bits (98), Expect = 1e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 ||||| |||||| || |||||||||| |||||| ||| ||| || || ||| Sbjct 62690 TCGTACTTGGTGTAGAGCTCCTCGAACTCCTTCCCCCAGCACTCCGATAGCCCCGGACAC 62749 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 | |||||||||||| |||||||| ||| | | || ||||| | |||||| | ||| Sbjct 62750 TGGGACGGGCACATGAGGCTCCACTCCCCGTCTTGCTCCACCCTTTCCATGAACAAGTCT 62809 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCT 245052 || ||||||||| | | ||| || ||||| Sbjct 62810 GGTATCCAGAGGCCGTAGAACAGATCCCT 62838 >seq11 Length=5521395 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | || |||||||| || ||||| ||||||||||| | ||||||||||| Sbjct 2274905 ACCTCGTCGGGGTCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTG 2274846 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 |||| || || || ||| |||| |||||| ||||||||| | |||||| | ||| Sbjct 2274845 CCCAAGTTCTTCTGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTG 2274786 Query 244826 CCGGTCTCGAGCTGGG 244841 || ||||| | ||||| Sbjct 2274785 CCAGTCTCAACCTGGG 2274770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944324208615200