Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq665 89.7 4e-13 seq8 86.0 5e-12 >seq665 Length=197211 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| ||||| || ||||||||| |||||||| || | | Sbjct 106889 CCGCCACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 106830 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| |||| ||||||||||| || ||||| |||||||| ||| || Sbjct 106829 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 106770 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 106769 ATGCCCTCCTTGTCCTGGATCTTCTGCTT 106741 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || | Sbjct 106090 CCGCCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA- 106032 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||||| || ||||| |||||||| ||| || Sbjct 106031 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 105972 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 105971 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 105942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || | Sbjct 107117 CCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA- 107059 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||||| || ||||| |||||||| ||| || Sbjct 107058 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 106999 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 106998 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 106969 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| || |||||||| || || || ||||||||| |||||||| || | Sbjct 107345 CCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA- 107287 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| ||||||||||| || ||||| |||||||| ||| || Sbjct 107286 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 107227 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | || ||| |||||| || || ||||| Sbjct 107226 GATGCCCTCCTTGTCCTGGATCTTCTGCTT 107197 >seq8 Length=4529048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || | || || Sbjct 418903 AGACGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 418844 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || |||||||||||||| ||| || | | ||| Sbjct 418843 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 418784 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 418783 TTGTCCTGGATCTTCTGCTT 418764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || ||||| ||||||||| |||||||| || | || || Sbjct 420478 AGGCGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 420419 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || |||||||||||||| ||| || | | ||| Sbjct 420418 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 420359 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 420358 TTGTCCTGGATCTTCTGCTT 420339 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || | || || Sbjct 421162 AGGCGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 421103 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||||||||| |||||||||||||| ||| || | | ||| Sbjct 421102 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 421043 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 421042 TTGTCCTGGATCTTCTGCTT 421023 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || | || || Sbjct 419131 AGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 419072 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || |||||||||||||| ||| || | | ||| Sbjct 419071 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 419012 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 419011 TTGTCCTGGATCTTCTGCTT 418992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || | || || Sbjct 420706 AGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 420647 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || |||||||||||||| ||| || | | ||| Sbjct 420646 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 420587 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 420586 TTGTCCTGGATCTTCTGCTT 420567 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || |||||||| || || || ||||||||| |||||||| || | || || Sbjct 420934 AGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGG 420875 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||||||||| || |||||||||||||| ||| || | | ||| Sbjct 420874 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCC 420815 Query 34030 TTGTCCATAATTTTTTGCTT 34049 |||||| || || ||||| Sbjct 420814 TTGTCCTGGATCTTCTGCTT 420795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056254218540