Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq665 113 1e-19 seq8 100 7e-16 >seq665 Length=197211 Score = 113 bits (124), Expect = 1e-19 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | || || || ||||| || ||||| | Sbjct 107573 CCACCGCGCAGGCGGAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 107514 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||||||||||||||| || ||| Sbjct 107513 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 107454 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| ||| |||||| || || | ||| | || || Sbjct 107453 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACG 107394 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||||||||| || || || ||||||||||| |||||||| Sbjct 107393 TCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 107347 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 106054 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 105995 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || |||||||| ||| |||||| Sbjct 105994 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 105935 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||||||||| || || || ||||||||| Sbjct 105934 TCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACG 105875 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 105874 AAGATCTGCAT 105864 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 106853 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 106794 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || |||||||| ||| |||||| Sbjct 106793 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 106734 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||||||||| || || || ||||||||| Sbjct 106733 TCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACG 106674 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 106673 AAGATCTGCAT 106663 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 107081 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 107022 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || |||||||| ||| |||||| Sbjct 107021 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 106962 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||||||||| || || || ||||||||| Sbjct 106961 TCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACG 106902 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 106901 AAGATCTGCAT 106891 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 107309 TCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 107250 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || ||||| || || || |||||||| ||| |||||| Sbjct 107249 ATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 107190 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||||||||| || || || ||||||||| Sbjct 107189 TCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACG 107130 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 107129 AAGATCTGCAT 107119 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| ||||| || | || || || ||||||||| Sbjct 105321 TTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 105262 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || ||||| || || || |||||||| ||| |||||| || Sbjct 105261 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 105202 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | || || ||||| ||||||||||| || || || ||||||||||| Sbjct 105201 ATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAG 105142 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 105141 ATCTGCAT 105134 Score = 109 bits (120), Expect = 1e-18 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| ||||| || | || || || ||||||||| Sbjct 106279 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 106220 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || ||||| || || || |||||||| ||| |||||| || Sbjct 106219 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 106160 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | ||| | || || ||||| ||||||||||| || || || ||||||||||| Sbjct 106159 ATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAG 106100 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 106099 ATCTGCAT 106092 Score = 95.1 bits (104), Expect = 3e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | |||||||| ||||| || | || || || ||||||||| Sbjct 104651 TTCTGGATGTTGTAGTCCGACAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCGAAGATC 104592 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 ||||| || || ||||| || || || |||||||| ||| |||||| || Sbjct 104591 AGACGTTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 104532 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || | || || ||||| ||||| ||||| || || || |||||||| || Sbjct 104531 ATCGTGTCAGAAGGCTCGACGTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACAAAG 104472 Query 288466 ATCTGCA 288472 ||||||| Sbjct 104471 ATCTGCA 104465 >seq8 Length=4529048 Score = 100 bits (110), Expect = 7e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || ||||| | || || || || | ||| || || ||||| || |||| Sbjct 420491 CATG-CCGCCACGGAGGCGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGT 420433 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | | || ||||| ||||| || | || || || ||||||||||| ||||| || Sbjct 420432 CCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCG 420373 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| || || || |||||||| ||| |||||| || || | || || | Sbjct 420372 GGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCT 420313 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 420312 CCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420261 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 418876 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 418817 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| ||| |||||| Sbjct 418816 ATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 418757 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || || || ||||||||| Sbjct 418756 TCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 418697 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 418696 AAGATCTGCAT 418686 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 419104 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 419045 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| ||| |||||| Sbjct 419044 ATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 418985 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || || || ||||||||| Sbjct 418984 TCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 418925 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 418924 AAGATCTGCAT 418914 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 420679 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 420620 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| ||| |||||| Sbjct 420619 ATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 420560 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || || || ||||||||| Sbjct 420559 TCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 420500 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 420499 AAGATCTGCAT 420489 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 420907 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 420848 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| ||||| || ||||| || || || |||||||| ||| |||||| Sbjct 420847 ATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCG 420788 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || || || || || ||||| ||||| || || || ||||||||| Sbjct 420787 TCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACG 420728 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 420727 AAGATCTGCAT 420717 Score = 95.1 bits (104), Expect = 3e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | ||| || || || | || || || ||||| || ||||| Sbjct 421174 TGCCCGCCACGGAGGCGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCC 421115 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| ||||| || | || || || || |||||||| ||||| || Sbjct 421114 GACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGG 421055 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| ||| |||||| || || | || || || Sbjct 421054 GGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCC 420995 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || || ||||||||||| |||||||| Sbjct 420994 ACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 420945 Score = 91.5 bits (100), Expect = 3e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | || ||||| ||||| || | || || || ||||||||| Sbjct 419558 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 419499 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | |||||| || ||||| || || || |||||||| ||| |||||| || Sbjct 419498 AAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 419439 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAAT 288465 || | || | || || || || ||||| ||||| || || || ||||||||||| Sbjct 419438 ATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 419379 Query 288466 ATCTGCAT 288473 |||||||| Sbjct 419378 ATCTGCAT 419371 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/192 (70%), Gaps = 1/192 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| ||||| || | || || || |||||| Sbjct 419333 TCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 419274 Query 288343 ATCAGAC-GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| | |||| || ||||| || || || |||||||| ||| |||||| Sbjct 419273 ATCAGGCCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCC 419214 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || | || || || || ||||| ||||| || || || |||||||| Sbjct 419213 GTCGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 419154 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 419153 GAAGATCTGCAT 419142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179635204811060