Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq14 111 3e-19 seq2 87.8 4e-12 >seq14 Length=3614499 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 243561 GCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCAT 243620 ||| || ||||||||| | |||||| ||||||||||||| ||| |||||||| | Sbjct 1009998 GCTGATCGGCATGAACAGCGCGCTCATGCGACAGTACATCGAGTTCTGCGCCGACCGGCT 1010057 Query 243621 TTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | || | |||||| | ||||| ||||||||| | ||||| || | || ||||| Sbjct 1010058 GCTGATGGAGCTTGGCTGCGAGAAGAAGTACAACTCGACCAACCCGTTCGACTGGATGGA 1010117 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTA 243734 | | |||||||| || ||||| || ||||||||||| ||| | ||| | || || Sbjct 1010118 GATGATTTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGAGAGTCGGGGAGTA 1010171 >seq2 Length=9289656 Score = 87.8 bits (96), Expect = 4e-12 Identities = 436/672 (65%), Gaps = 33/672 (5%) Strand=Plus/Plus Query 333339 CGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCA 333398 ||||| |||| |||| ||| || ||| ||| | || ||||||||||||||||| ||| Sbjct 2234321 CGCCACCGGATGTACTCGTTCGGGGTCTTGTTCATGTGGTCCTCGATGTGGTGGAAGGCA 2234380 Query 333399 TGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTTCCGTTGGTGGCT 333458 ||||| |||| |||||| | ||| ||| |||||| ||| || ||| | | | Sbjct 2234381 TGCTGCGCCAAGTAAGCTACTCGCGCATTGGGATGCCGCCACACGTCGCCGGTCTGCGGT 2234440 Query 333459 TCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCCGCACCATTTTCGCCTACC 333518 | | | || || |||||||| || | || || ||||| || || ||||| || Sbjct 2234441 ACAACCTCGCCAGTCAGCACCTTGATCATGGTCGACTTCCCCGCGCCGTTCTCGCCCAC- 2234499 Query 333519 ACAC-CAATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTC 333577 |||| ||| | || ||| || || ||| || | |||| |||| || Sbjct 2234500 ACACGCAACACGCGACGACAGAGAGACTTGGACAGAGA---TGTCGAAGAGG-GTGGGCA 2234555 Query 333578 CG----TACCCGGATACTTGAACCCCACACCGCGT-AGCTTCATGATGGCACGGTCCTTC 333632 || | || || ||| |||| | || | | | |||||| | || |||| Sbjct 2234556 CGGTGTTGCCGGGGTACGTGAAGTCG-CAGTGTGCCATCTTCATCAGCGCCTTACCCTTG 2234614 Query 333633 GAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTA 333692 || ||| ||||||| |||||||| ||||| || || | ||| | | | | Sbjct 2234615 GACTTGACGCCCTCGATCGGCCCGGGCTGCGGGAAGTTGAACTTCAGCTTGGACGCCTTG 2234674 Query 333693 AGGGCGTAGTA--ACTCG-CTGATTCGGGACGCTT--CTTCACGAACTCGGACAGATTTC 333747 || || || | ||| | | | ||||| || | ||| |||||| ||| |||| Sbjct 2234675 AGCTCGAAGAACGACTTGGCCG--TCGGGT---TTACCGCCACAAACTCGTTCAGGTTTC 2234729 Query 333748 CCTTGTACTTCTTCAGCTTTAGGTTAG-GTTCGTAATGGATAATAGAGG-TGCAAACAG- 333804 ||||| | || ||||| ||||| | ||| || |||| | || |||| ||| Sbjct 2234730 CCTTGAAGTTGACAAGCTTCAGGTTCTCGATCGAAA-GGAT----GTGGCTGCAG-CAGT 2234783 Query 333805 CGTCGAGGAACCCGGAGTCGTGTGACACAATCA-CGCACGAAACGTCCTTAAGGTTGATC 333863 ||| ||||| || |||||||| ||||| || | ||| || |||| | ||| || | Sbjct 2234784 CGTTGAGGAGACCAGAGTCGTGCGACACCATGATCGC-CGTGACGTTGGTGAGGCTGTTG 2234842 Query 333864 AGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGA 333923 ||||| | ||| |||| |||||| ||| | ||||||||||||||||| || Sbjct 2234843 AGGTAGTTCTTCACCCACGCCACGTTGATGACATCCAAGTGGTTGGTCGGCTCGTCCAGC 2234902 Query 333924 AGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCT 333983 | || | | || ||| ||||||| |||||||| | || || ||||| ||| ||| Sbjct 2234903 AAAAGGATGTCCGCCTTCTGGAGCATCGCACGTGCCATGGCCAGCTTCATGCGCCATCCT 2234962 Query 333984 CCTGAAAGAGTG 333995 || || || ||| Sbjct 2234963 CCCGACAGCGTG 2234974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102862054074500