Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1 105 8e-18 seq14 100 3e-16 seq33 96.9 4e-15 seq11 87.8 2e-12 >seq1 Length=3745584 Score = 105 bits (116), Expect = 8e-18 Identities = 272/410 (66%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || || ||||| || |||||||||||||||||||| |||||||| || ||||| || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG---TTGA 10903 || ||||| | | || | | | | ||||| |||||||| || ||| || Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTC---CACGAGCATCTGG 2280243 Query 10904 TTGATGGTTTGTTCGCGTTCATCATT--CG-CGGGCATACCACCCGCACTGCGTTGCTTA 10960 || | || || |||||||| || || || ||| ||| || | | ||| ||| Sbjct 2280244 TTCAGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGC---TGCCGCGCTGCCGG 2280300 Query 10961 CCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 11020 ||||||||||| ||||| |||||||| | ||| ||||| || || || || Sbjct 2280301 CCGACGGCGTCGATTTCGTCGATGAAGATGATGCACGGAGAGTTCTCCTTCGCCTTGTCG 2280360 Query 11021 AAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCG 11080 || | || || || | ||||| || ||||| ||||| || || || | | || Sbjct 2280361 AACAAGTCGCGCACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCCG 2280420 Query 11081 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 11140 || ||||||||| ||| | || || || | ||| || |||| ||| ||||| Sbjct 2280421 GAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTTA 2280480 Query 11141 CCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 11190 || || || ||| || |||| | | || || |||||| |||| || Sbjct 2280481 CCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 >seq14 Length=3614499 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || ||| ||||||||| |||||||||||||| || ||||| || || Sbjct 1009376 GTGGAGACCCTCATCTCGGCTGATGAGTTCGTTCGAGAAGCACAGCCCGGGCATCAGCCC 1009317 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||||||||| |||||| | || || || || || |||||||| |||| Sbjct 1009316 TCGCTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCGGAAAAGAAGATGCCCT 1009264 >seq33 Length=4484617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 ||| || |||||||| || ||||| | || || |||||| ||| || |||||||| || Sbjct 716522 GTGCAGCCCCTCGTCGCGCGAGATCATCTCGTTAGAGAAGGTCAGGCCGGGCATGAGGCC 716581 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCT 126170 |||||||||| |||||| ||||| ||||| ||||||||||||| |||| Sbjct 716582 ACGCTTCTTCAGCCAGAAGATCGCGCAAAAGCTTCCCGAGAAGAAGACGCCCT 716634 >seq11 Length=5521395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 114509 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 114568 || |||||||| || || ||||| || | || || ||| ||||||||||||||||| Sbjct 2274893 TCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCCCAAGTTCTTC 2274834 Query 114569 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 114624 || || ||| |||| ||||| |||||| | |||||||| ||||| || ||||| Sbjct 2274833 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTGCCAGTCTC 2274778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344117011600