Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq23 102 7e-17 seq665 91.5 1e-13 >seq23 Length=3983565 Score = 102 bits (112), Expect = 7e-17 Identities = 145/202 (72%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCAC--GGACGCGACATCGAAAACGCGA 122973 || || ||| |||||||||| | | ||| | ||| ||||| ||||||| || | || Sbjct 2109471 CAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGACG--ACATCGACAAGGTGA 2109414 Query 122974 CCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCG 123033 ||| || ||||| | ||||| || | | ||||||||||| | ||||| ||||| Sbjct 2109413 TCGAGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCCACCCCCACCCTGTTCA 2109354 Query 123034 CCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACA 123093 ||||||||| ||| ||| |||| ||||| || |||||||| || || |||| Sbjct 2109353 ACGCCGGCACCCCCAAGCCCCAGATGTCGTCGTGCTTCCTGCTCACCATGAAGGAGGACA 2109294 Query 123094 GCATCACCGGTATCTATGAAAC 123115 |||||| ||| ||||| || || Sbjct 2109293 GCATCAACGGCATCTACGACAC 2109272 >seq665 Length=197211 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || ||||| ||||| || || || | ||| || || Sbjct 107328 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107269 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| || ||||||||||| || ||||| || || || || Sbjct 107268 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 107209 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | | || | |||||||||| ||| || |||||||| | ||| || Sbjct 107208 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTT 107149 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| || || || || || || || ||||| ||| || Sbjct 107148 GCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 107111 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | |||| || ||||||||||| || ||||| || || Sbjct 106246 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 106187 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || || | | || | |||||||||| ||| || |||||||| | | Sbjct 106186 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATC 106127 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || || || || || || || ||||| ||| || Sbjct 106126 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 106084 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | |||| || ||||||||||| || ||||| || || Sbjct 106817 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 106758 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || || | | || | |||||||||| ||| || |||||||| | | Sbjct 106757 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATC 106698 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || || || || || || || ||||| ||| || Sbjct 106697 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 106655 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || ||||| ||||| || || || | ||| || || Sbjct 107100 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107041 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || || || ||| | |||| || ||||||||||| || ||||| || || || || Sbjct 107040 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 106981 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || || || | | || | |||||||| | ||| || |||||||| | ||| || Sbjct 106980 GATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTT 106921 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| || || || || || || || ||||| ||| || Sbjct 106920 GCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 106883 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || ||||| || || ||||| ||||| || || || Sbjct 107573 CCACCGCGCAGGCGGAGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 107514 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || |||| || || || ||| | |||| || ||||||||||| || Sbjct 107513 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGG 107454 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || || || || || || | | || | |||||||| | ||| || Sbjct 107453 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACG 107394 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 |||||||| | ||| ||||| || || || || || || || ||||| ||| || Sbjct 107393 TCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 107339 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | |||| || ||||||||||| || ||||| || || Sbjct 105288 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 105229 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || || | | || | |||||||||| ||| || |||||||| | | Sbjct 105228 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATC 105169 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || || || || || || || || || || ||||| ||| || Sbjct 105168 GTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 105126 Score = 82.4 bits (90), Expect = 7e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| || || || ||| | |||| || ||||||||||| || ||||| || || Sbjct 106018 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 105959 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 || || || || || || | | || | |||||||| | ||| || |||||||| | | Sbjct 105958 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATC 105899 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 || ||||| || || || || || || || ||||| ||| || Sbjct 105898 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATGCCGCCAC 105856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996024449200