Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 120 4e-22 seq14 100 3e-16 seq11 84.2 3e-11 >seq1 Length=3745584 Score = 120 bits (132), Expect = 4e-22 Identities = 275/410 (67%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || || ||||| || |||||||||||||||||||| |||||||| || ||||| || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAG---TTGA 12818 || ||||| | | || | | | ||||||| |||||||| || ||| || Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTC---CACGAGCATCTGG 2280243 Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CG-CGGGCATACCACCCGCACTGCGTTGCTTA 12875 || | || || || ||||| || || || ||| ||| || | | ||| ||| Sbjct 2280244 TTCAGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGC---TGCCGCGCTGCCGG 2280300 Query 12876 CCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA 12935 ||||||||||| |||||||| ||||| | ||| ||||| || || || || Sbjct 2280301 CCGACGGCGTCGATTTCGTCGATGAAGATGATGCACGGAGAGTTCTCCTTCGCCTTGTCG 2280360 Query 12936 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 12995 || | || ||||| | ||||| || ||||| |||||||| || || | | || Sbjct 2280361 AACAAGTCGCGCACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCCG 2280420 Query 12996 GAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 13055 || ||||||||| ||| | || || || | ||| || |||| ||| ||||| Sbjct 2280421 GAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTTA 2280480 Query 13056 CCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 || || || ||| ||| |||| | | || || |||||| |||| || Sbjct 2280481 CCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 >seq14 Length=3614499 Score = 100 bits (110), Expect = 3e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || ||| ||||||||| |||||||||||||| || ||||| || || Sbjct 1009376 GTGGAGACCCTCATCTCGGCTGATGAGTTCGTTCGAGAAGCACAGCCCGGGCATCAGCCC 1009317 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 |||||||||| |||||| | || || || || || |||||||| |||| Sbjct 1009316 TCGCTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCGGAAAAGAAGATGCCCT 1009264 >seq11 Length=5521395 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 116470 TCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTT 116529 || |||||||| || || ||||| || | || || ||| ||||||||||||||||| Sbjct 2274893 TCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCCCAAGTTCTTC 2274834 Query 116530 TGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTC 116585 || || ||| |||| ||||| |||||| | ||||| || ||||| || ||||| Sbjct 2274833 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTGCCAGTCTC 2274778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613497460573200