Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq23 98.7 2e-15 seq33 93.3 7e-14 >seq23 Length=3983565 Score = 98.7 bits (108), Expect = 2e-15 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCA---GGCCTGCTTCTCAGATAGTACAT 203895 || ||| ||||||||||| ||||||| |||| || | | | | || |||||||| Sbjct 2102856 CTGGTCGACCGTGAACTGGATGGCGT---CGGCCTTGGGGCGGGTGCGGAGGTAGTACAT 2102912 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTT 203955 ||||||||| |||||||||| |||| |||| | ||||||||| |||| || | | | Sbjct 2102913 GCCGGTCTTGAGGCCCTTCTTCCACGCGTAGAAGTGCATGGAGGACAACTTCCCGAAGGA 2102972 Query 203956 GGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGC 204015 | || |||||||| | ||||| |||||| |||| |||| | | | | || || || Sbjct 2102973 TGCCTCCGCCATGTGCACGTTCATGGACTGGGATTGGCAGATGTACGCCCCTCGGTCCGC 2103032 Query 204016 GGCC 204019 ||| Sbjct 2103033 CGCC 2103036 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 204237 TGGTGAATGGTTCGAACGC-CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGC 204295 ||||||| || || ||||| |||||||||||| | ||||| || || ||| |||||| Sbjct 2104477 TGGTGAAGGGCTC-AACGCTCTCGTTGTTGCCCAGGATCTGGGCAGTAGAGGCGGTGGGC 2104535 Query 204296 ATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAG 204355 || || |||| ||||||||||| | | |||| | | |||| ||| || | Sbjct 2104536 ATCGGCGCCACCAGCAGGGAGTTCCTGAGGCCGTGCTCGGCCATCCTGGCCTTGAGGGCC 2104595 Query 204356 GTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCC 204411 | |||||||||| || | |||| || |||||||| | ||||||||| | || ||| Sbjct 2104596 GCCCAGTCGTGCCTCCCGGTGGGCTTGACGCCCCAAAGGTCGAACTGGAGGAGGCC 2104651 >seq33 Length=4484617 Score = 93.3 bits (102), Expect = 7e-14 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 ||||| |||| || |||||||||||||| |||||||| || ||||| | |||||| || Sbjct 716499 AACAGCTGGCAGGCGAAGTCGCAGTGCAGCCCCTCGTCGCGCGAGATCATCTCGTTAGAG 716558 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC 160029 | | | ||||| ||||||| |||||| || ||||| || || | ||||||||| Sbjct 716559 AAGGTCAGGCCGGGCATGAGGCCACGCTTCTTCAGCCAGAAGATCG-CGCAAAAGC 716613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795142576911200