Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1256 152 7e-32 seq12 140 4e-28 seq698 129 7e-25 >seq1256 Length=313492 Score = 152 bits (168), Expect = 7e-32 Identities = 280/407 (69%), Gaps = 10/407 (2%) Strand=Plus/Plus Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 ||| ||||| || | || ||||| || ||||| ||| || |||||||| || ||||| Sbjct 214410 CTTGCCGAGGTAGGCCTCGGCGATCTCCTTCATCTTGACCAGCACCATCGAAGATATCTC 214469 Query 7807 TTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 |||| ||| ||||| ||| | || || || ||| || || ||| |||| || | | Sbjct 214470 CTCAGGCGCGAACTGCTTCTTGTCTCCCTTGAAAGATACCTCGATCGTGGGCTTCCCACC 214529 Query 7867 AGCACCGGGGATAACCTTATACGACCAATCTTTCATATC---GTCTTGGACCTGTTGGTC 7923 | ||| | || || | | | ||| | ||| | || | | | || | ||| Sbjct 214530 GGTACCCGCGACCACACTGAAGGGCCAGTGCTTCTTGTCAGAGGCCACGGCCGG---GTC 214586 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGC 7983 | ||||| | ||||| || ||||| ||||| || || ||||| ||| |||||| || Sbjct 214587 GGTGAACTTGCGGCCGATCAGTCGCTTGGCATCGAAGACGGTGTTGGTGGCGTTCATCGC 214646 Query 7984 TGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTA 8043 |||||||| || || || ||||| | ||| || | | | || || || ||||| Sbjct 214647 CACCTGGTTCTTGGCGGCATCGCCGATCAAACGCTCCGTCT---CGGTGAAGGCCACGTA 214703 Query 8044 CGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCA 8103 || || ||||| || || || |||||||| || || || || ||||||||||| ||||| Sbjct 214704 GGACGGAGTCGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCA 214763 Query 8104 GACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGCTT 8150 ||||| ||||| || || || || || | || || |||| ||||| Sbjct 214764 CACGCCTACGCAAGAGTAAGTCGTGCCCAGGTCGATGCCGA-TGCTT 214809 Score = 111 bits (122), Expect = 2e-19 Identities = 193/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || || ||||| || || || || || ||||| || Sbjct 211849 TCGAAGTCCTCTCCGCCCAGGTGGGTGTCGCCCGCCGTTGCCTTCACCTCGAAGATGCCC 211908 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || || || || || || |||||||| || ||||| ||| Sbjct 211909 TCCTCGATGGTAAGCACGCTCACGTCGAAGGTGCCCCCGCCCAGGTCGAAGATGAGCACG 211968 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || ||| | || ||| || || ||||||||||| ||||| || || || || Sbjct 211969 TTGCGCTCCTCGCCCTT---CTTGTCCAGGCCGTACGCGATGGCCGCGGCGGTCGGCTCG 212025 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || | ||| ||||| | || | | | || || || ||||| || || Sbjct 212026 TTGATGATGCGCATCACGTTGAGGCCCGAGATGGATCCGGCGTCCTTGGTCGCCTGGCGC 212085 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 || || ||||| ||||| || || || || | ||||||| Sbjct 212086 TGGGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGT 212125 >seq12 Length=3842133 Score = 140 bits (154), Expect = 4e-28 Identities = 261/383 (68%), Gaps = 3/383 (1%) Strand=Plus/Plus Query 7763 TCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT 7822 || ||||| || ||||| ||| || ||||| || || ||||| |||| ||| ||||| Sbjct 3219633 TCGGCGATCTCCTTCATCTTGACCAGCACCATGGAGGAGATCTCCTCAGGCGCGAACTGC 3219692 Query 7823 TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACC 7882 ||| | || || || ||| | || ||| |||| || | | | ||| | || || Sbjct 3219693 TTCTTCTCTCCCTTGAAAGATATCTCGATCGTGGGCTTCCCACCGGGACCCGCGACCACA 3219752 Query 7883 TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATA 7942 | | | ||| | ||| | ||| || |||||| ||||| | ||||| Sbjct 3219753 CTGAAGGGCCAGTGCTTCTTGTCGGAGGCCACGGCCGGGTCCGTGAACTTGCGGCCGATC 3219812 Query 7943 AGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCG 8002 || |||| | ||| || || ||||| ||| |||||| || | |||||||| || || Sbjct 3219813 AGCCGCTCGGTATCGAAGACGGTGTTGGTGGCGTTCATCGCCGCCTGGTTCTTGGCGGCA 3219872 Query 8003 TCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTC 8062 || ||||| || || || | | | || || || ||||| || || ||||| || || Sbjct 3219873 TCGCCGATCAGGCGCTCCGTCT---CGGTGAAGGCCACGTAGGACGGAGTCGTGCGGTTG 3219929 Query 8063 CCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATAC 8122 || |||||||| || || || || ||||||||||||||||| | ||| || ||||| || Sbjct 3219930 CCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTTTGCCACATGCCCACACACGAGTAG 3219989 Query 8123 GTTGTTCCTAAATCAATACCGAT 8145 || || || | || || ||||| Sbjct 3219990 GTCGTGCCCAGGTCGATGCCGAT 3220012 Score = 132 bits (146), Expect = 6e-26 Identities = 269/399 (67%), Gaps = 3/399 (1%) Strand=Plus/Plus Query 7747 CTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 ||| || || || | || ||||| || ||||| ||| || ||||| || || ||||| Sbjct 3092424 CTTGCCAAGGTAGGCCTCGGCGATCTCCTTCATCTTGACCAGCACCATGGAGGAGATCTC 3092483 Query 7807 TTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGC 7866 |||| ||| ||||| ||| | || || || ||| || || ||| |||| || | | Sbjct 3092484 CTCAGGCGCGAACTGCTTCCTCTCGCCCTTGAAAGACACCTCGATCGTGGGCTTGCCGCC 3092543 Query 7867 AGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGA 7926 || || || ||| | | | ||| | ||| | ||| || |||| | Sbjct 3092544 GGCGCCCTCGACAACGTCGAAGGGCCAGTGCTTCTTGTCGGAGGCCACGGCCGGGTCGGT 3092603 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 ||| | | ||||| || ||||| || || || || ||||| ||| |||||| || Sbjct 3092604 GAACCTGCGGCCGATCAGCCGCTTGGCGTCGAAGACGGTGTTGGTGGCGTTCATCGCCAC 3092663 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGA 8046 |||||||| || || || ||||| || || || | | | || || || ||||| || Sbjct 3092664 CTGGTTCTTGGCGGCATCGCCGATCAGGCGCTCCGTCT---CGGTGAAGGCCACGTAAGA 3092720 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 || || || || || || |||||||| || || || || ||||||||||| ||||| || Sbjct 3092721 CGGAGTGGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCCACGCGGTCGTTCTGCCACAC 3092780 Query 8107 GCCGACGCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| || || || || || || || | || |||||||| Sbjct 3092781 GCCCACACAAGAGTAGGTCGTGCCCAGGTCGATACCGAT 3092819 Score = 116 bits (128), Expect = 5e-21 Identities = 194/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || || || ||||| || || || || ||||| || Sbjct 3091322 TCGAAGTCCTCTCCGCCCAGGTGGGTGTCGCCAGCGGTGGCCTTCACCTCGAAGATGCCC 3091381 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || || || || || || |||||||| || ||||| ||| Sbjct 3091382 TCCTCGATGGTCAGCACGCTCACGTCGAAGGTTCCGCCGCCCAGGTCGAAGATGAGCACG 3091441 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || ||| | || ||| || || ||||||||||||||||| || || || || Sbjct 3091442 TTGCGCTCCTCGCCCTT---CTTGTCCAGGCCGTACGCGATAGCCGCGGCGGTCGGCTCG 3091498 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || | ||| ||||| | || | | | || || || ||||| || || Sbjct 3091499 TTGATGATGCGCATCACGTTGAGGCCGGAGATGGCTCCGGCGTCCTTGGTCGCCTGGCGC 3091558 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 || || ||||| ||||| || || || || | ||||||| Sbjct 3091559 TGGGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGT 3091598 Score = 98.7 bits (108), Expect = 1e-15 Identities = 191/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| ||||| || ||||| || || || || ||||| || Sbjct 3217903 TCGAAGTCCTCTCCGCCCAGGTGGGTATCGCCAGCGGTGGCCTTCACCTCGAAGATGCCC 3217962 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | | || || || || | || || |||||||| || ||||| ||| Sbjct 3217963 TCCTCGACGGTCAGCACGCTCACGTCGAAGTTGCCGCCGCCCAGGTCGAAGATGAGCACG 3218022 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || ||| | || ||| || || ||||||||||| ||||| || || ||||| Sbjct 3218023 TTGCGCTCCTCGCCCTT---CTTGTCCAGGCCGTACGCGATGGCCGCGGCGGTCGGTTCG 3218079 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || | || | ||| || || | || | | | || || || ||||| || || Sbjct 3218080 TTGAT-GTGCGCATCACGTTAAGACCCGAGATGGCTCCGGCGTCCTTGGTCGCCTGGCGC 3218138 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 || || ||||| ||||| || || || || | ||||||| Sbjct 3218139 TGGGAGTCGTTGAAGTATGCAGGCACGGTGATCACCGCGT 3218178 >seq698 Length=144905 Score = 129 bits (142), Expect = 7e-25 Identities = 201/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || || || |||| ||| || ||||||||||| || || || || ||||| || Sbjct 137027 TCGAAGTCCTCCCCTCCCAGGTGGGTGTCCCCCGCGGTGGCCTTCACCTCGAAGATGCCC 137086 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | || || || || || || || |||||||| || ||||| ||| Sbjct 137087 TCCTCGATGGTCAGCACGCTCACGTCGAAGGTTCCGCCGCCCAGGTCGAAGATGAGCACG 137146 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || ||| | || ||| || || ||||||||||| ||||| || ||||| || Sbjct 137147 TTGCGCTCCTCGCCCTT---CTTGTCCAGGCCGTACGCGATGGCCGCGGCGGTTGGCTCG 137203 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || || || | ||| ||||| | || | | | || || || ||||| || || Sbjct 137204 TTGATGATGCGCATCACGTTGAGGCCCGAGATGGCTCCGGCGTCCTTGGTCGCCTGGCGC 137263 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGAC 7743 || || ||||| ||||| || || || || | ||||||| | |||| Sbjct 137264 TGGGAGTCGTTGAAGTACGCGGGCACGGTGATCACCGCGTTCTTGAC 137310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635122717266800