Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq1 100 4e-16 seq14 87.8 2e-12 >seq1 Length=3745584 Score = 100 bits (110), Expect = 4e-16 Identities = 274/411 (67%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || || ||||| || ||||| ||||| ||||| || |||||||| | || || || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 15945 GCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 || ||||| | | ||| | | | | || || |||||||| | | |||||| Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTCCACGAGCATCTGGTTC 2280246 Query 16005 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCCC 16061 | || || || ||||| || || ||| ||| || || | | ||| ||| || Sbjct 2280247 AGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGCTGCC---GCGCTGCCGGCCG 2280303 Query 16062 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT--CAA 16119 ||||| || || || || ||||||| |||||| || || || | | || ||| | | Sbjct 2280304 ACGGCGTCGATTTCGTCGATGAAGATGATGCACGGA-GAGTT-CTCCTTCGCCTTGTCGA 2280361 Query 16120 AGAGATCCCGTACACGCTTGGCGC--CCACACCAACAAACATCTCCACAAAGTTTGCGGC 16177 | | || || ||||| || ||| |||| || || |||||||| || || | | | Sbjct 2280362 ACAAGTCGCG--CACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCC 2280419 Query 16178 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 16237 ||| ||||||||| || || || || || | ||| || |||| |||||||| Sbjct 2280420 GGAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTT 2280479 Query 16238 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||| ||||| || ||| |||||| | || || || ||||||||||| Sbjct 2280480 ACCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 >seq14 Length=3614499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 102208 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 102267 |||| |||||||| || || ||||||||| | | ||||| ||||||||||| || | Sbjct 1009264 AGGGCATCTTCTTTTCCGGAAGCTTCTGCGCCGTGTTCTGGCTGAAGAAGCGAGGGCTGA 1009323 Query 102268 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||| || || |||||||| ||||| || ||| || || ||||| |||||| Sbjct 1009324 TGCCCGGGCTGTGCTTCTCGAACGAACTCATCAGCCGAGATGAGGGTCTCCAC 1009376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620732545714400