Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 183 4e-41 seq10 82.4 9e-11 >seq1 Length=3745584 Score = 183 bits (202), Expect = 4e-41 Identities = 338/490 (69%), Gaps = 8/490 (2%) Strand=Plus/Plus Query 11490 CACCTGAATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGAC 11549 |||| | | | | || ||||| || || |||||||| || || || || || ||||||| Sbjct 2280114 CACCAGCACCCTGCGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGAT 2280173 Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGT 11609 |||||| || || || ||||| | | || | | | |||| |||||||| || Sbjct 2280174 ACGGTTGGTGGCAGCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTCCAC 2280233 Query 11610 GAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAG---GGCATACCACCTGCCGA 11666 ||| | |||||| | |||||| || || || |||||| | | ||| || | ||||| Sbjct 2280234 GAGCATCTGGTTCAGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGC-TGCCG- 2280291 Query 11667 ACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACG 11726 |||| | ||||| ||||| || || |||||||| | ||| ||||| ||| | Sbjct 2280292 -CGCTGCCGGCCGACGGCGTCGATTTCGTCGATGAAGATGATGCACGGAGAGTTCTCCTT 2280350 Query 11727 TGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAA 11786 |||| ||||| | || || || || ||| || || || ||||||||||||||||| Sbjct 2280351 CGCCTTGTCGAACAAGTCGCGCACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAA 2280410 Query 11787 GTTTGCGGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAG 11846 | | | || |||||||| || || ||| || || | ||| ||||||| Sbjct 2280411 CTCAGATCCGGAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGAT 2280470 Query 11847 GAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 |||||||||||| ||||| |||| || |||| | |||| || ||||||||||| || Sbjct 2280471 GAGAGTCTTACCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 Query 11907 -ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCT 11965 || | ||| | || ||||||||||||||||| | |||||| || || || Sbjct 2280531 GACCT-TGGTGTACTTGGCGGGGTTCTTGAGGAAGTCCACCACCTCCTCCAGCTCGAACT 2280589 Query 11966 TGGCGGAGTC 11975 | |||||||| Sbjct 2280590 TCGCGGAGTC 2280599 >seq10 Length=4527641 Score = 82.4 bits (90), Expect = 9e-11 Identities = 97/130 (75%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 11588 TGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGG 11647 |||||||||| |||||||| || | |||||||| | ||||| || ||||| ||||| | Sbjct 1774248 TGTCGAAACCATCCATTTCCGTCAAGAGCTGGTTCAAGGTCTGCTCCCGCTCGTCGTTAG 1774189 Query 11648 AGGGCATACCACCTGCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGA 11707 || || || || |||||| ||| | | |||||||| |||||||||||| | || Sbjct 1774188 AGTTTATGCCGCC--CCGAAC----CTTGGCCAGAGCGTCAAGCTCATCGATGAAGATGA 1774135 Query 11708 TACACGGTTG 11717 | | ||||| Sbjct 1774134 TGCTAGGTTG 1774125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966650006000