Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 4e-15 seq1 82.4 9e-11 >seq14 Length=3614499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||||||||||||||||||| || ||||| || |||||||| || || ||||| || || Sbjct 1009376 GTGGAGACCCTCATCTCGGCTGATGAGTTCGTTCGAGAAGCACAGCCCGGGCATCAGCCC 1009317 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCT 117397 |||||||||| ||| | | |||||||| ||||| |||||||| |||| Sbjct 1009316 TCGCTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCGGAAAAGAAGATGCCCT 1009264 >seq1 Length=3745584 Score = 82.4 bits (90), Expect = 9e-11 Identities = 264/407 (65%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || || ||||| || || || ||||| ||||| || |||||||| | || || || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || ||||| | | ||| | | | || || |||||||| | | ||||| Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTCCACGAGCATCTGGTTC 2280246 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCCC 9368 | || || || ||||| || || ||| ||| || || | | ||| ||| || Sbjct 2280247 AGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGCTGCC---GCGCTGCCGGCCG 2280303 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 ||||| || || || || ||||||| || || || || || || | || || Sbjct 2280304 ACGGCGTCGATTTCGTCGATGAAGATGATGCACGGAGAGTTCTCCTTCGCCTTGTCGAAC 2280363 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 | ||||| || | | || ||||| || || |||||||| || || | | |||| Sbjct 2280364 AAGTCGCGCACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCCGGAG 2280423 Query 9489 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 ||||||||| || || || || || | ||| || |||| ||||||||||| Sbjct 2280424 GTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTTACCG 2280483 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 ||||| || ||| |||||| | || || || ||||||||||| Sbjct 2280484 GTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589971434054800