Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 111 1e-19 >seq1 Length=3745584 Score = 111 bits (122), Expect = 1e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 30115 AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAA 30174 ||||| ||||| || |||||| |||||| || ||||||||||||||| || || ||| Sbjct 1937435 AGCTGGTCCACTCCTTTCCCCGTGTAGTCGGCGTGCATGTCCGTGTACTCCGCGCCAAAA 1937376 Query 30175 TGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC 30218 |||||||| ||||| ||||||||||| || |||||||| ||||| Sbjct 1937375 TGCCTCCATTGGAAACCGTACACCGGCCCAAGGTCTCCTTCTTC 1937332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/241 (69%), Gaps = 9/241 (4%) Strand=Plus/Minus Query 30247 AAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAG 30306 || || || || |||||| |||||||||| | | |||| || |||| | || | | Sbjct 1936327 AACTCCCTCGACCCGTTGCCGTCCCAGATGTGGATCCCCCGTTCCTTGAGCACGTTCGCG 1936268 Query 30307 TTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30366 ||||| |||| |||||||||||||||||||||| | ||| | ||| || || | | Sbjct 1936267 TTTGTACACCCAGCGACGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAACACGCGC 1936208 Query 30367 TTGGTCGTGAGGAG-GGGAA--ACTGTCCCTTGAGGCCGTA---CATGGCCTGAGAACCA 30420 ||||| || || || ||||| || | || |||||| | | ||| ||| || Sbjct 1936207 TTGGTGGTCAGCAGCGGGAACCGCTCTTCCCTGAGGCTGAAGCGCAT---CTGCACGCCG 1936151 Query 30421 AACACGGACAAGACTCCCGTGCCCGTCCTGTCTCCCCTGCGTTTACCGTTTTCCAAGACG 30480 ||| ||||| ||||| ||||| | ||| |||||||| ||||| |||| || | Sbjct 1936150 AACTTGGACAGCGTCCCCGTCCCCGTGCGGTCCCCCCTGCGGACGCCGTTGTCCAGGATG 1936091 Query 30481 T 30481 | Sbjct 1936090 T 1936090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408611275365710