Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8 100 2e-16 seq665 96.9 3e-15 >seq8 Length=4529048 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| ||| || || || ||||| || || Sbjct 418913 GCCGCCACGAAGACGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 418854 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 418853 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 418794 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 418793 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 418734 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 418733 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 418686 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || ||||| ||| || || || ||||| || || Sbjct 420488 GCCGCCACGGAGGCGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 420429 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 420428 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420369 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 420368 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420309 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 420308 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420261 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 421171 CCGCCACGGAGGCGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 421112 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| |||| |||||| |||||||| ||||| ||||| || |||| ||| Sbjct 421111 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 421052 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 421051 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACG 420992 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 420991 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 420945 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 419141 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 419082 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 419081 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 419022 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 419021 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 418962 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 418961 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 418914 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 420716 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 420657 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 420656 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420597 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 420596 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420537 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 420536 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 420944 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 420885 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 420884 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420825 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||||||||||| ||||| || || || | | | || |||| |||||| Sbjct 420824 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420765 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || ||||| | || || || || |||||||| Sbjct 420764 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420717 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 419370 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 419311 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTC-GCTGTTGATCCGTGG 48657 || | || |||| |||| |||||| ||||| || ||||| | |||| || |||| || Sbjct 419310 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCCGCTGCTGGTCCGGGG 419251 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | ||||||||||| ||||| || || || | | | || || | ||||| Sbjct 419250 GGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCA 419191 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 | |||| || || || || ||||| | || || || || |||||||| Sbjct 419190 CGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 419142 >seq665 Length=197211 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 106091 GCCGCCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 106032 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 106031 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 105972 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || || | | | || || | |||||| Sbjct 105971 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCAC 105912 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | || || || || |||||||| Sbjct 105911 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 105864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 106890 GCCGCCACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 106831 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 106830 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 106771 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || || | | | || || | |||||| Sbjct 106770 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCAC 106711 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | || || || || |||||||| Sbjct 106710 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106663 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 107118 GCCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 107059 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 107058 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 106999 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || || | | | || || | |||||| Sbjct 106998 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCAC 106939 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | || || || || |||||||| Sbjct 106938 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106891 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| || || || ||| || || || ||||| || || Sbjct 107346 GCCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 107287 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| |||| |||||| ||||| || ||||| ||||| || |||| ||| Sbjct 107286 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 107227 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || || | | | || || | |||||| Sbjct 107226 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCAC 107167 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || ||||| | || || || || |||||||| Sbjct 107166 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 107119 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || || | || |||| |||| |||||| ||||| || Sbjct 107538 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 107479 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| ||||| || |||| ||| | |||||||||||| ||||| || || || Sbjct 107478 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCC 107419 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | |||||| || | || ||||| || ||||| | || || || Sbjct 107418 GTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGAC 107359 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 107358 GAAGATCTGCAT 107347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || || | || |||| |||| |||||| ||||| || ||| Sbjct 105321 TTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 105262 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||| | |||||||||||| ||||| || || || | Sbjct 105261 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 105202 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | |||||| || | || ||||| || ||||| | || || || || Sbjct 105201 ATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAAG 105142 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 105141 ATCTGCAT 105134 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 48579 TTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATC 48638 || || || ||||| || || || | || |||| |||| |||||| ||||| || ||| Sbjct 106279 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 106220 Query 48639 AGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCC 48698 || ||||| || |||| ||| | |||||||||||| ||||| || || || | Sbjct 106219 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 106160 Query 48699 ACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAA 48758 | | || || | |||||| || | || ||||| || ||||| | || || || || Sbjct 106159 ATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAG 106100 Query 48759 ATCTGCAT 48766 |||||||| Sbjct 106099 ATCTGCAT 106092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931703800210