Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq23 114 2e-20 seq14 91.5 3e-13 seq11 91.5 3e-13 >seq23 Length=3983565 Score = 114 bits (126), Expect = 2e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 222349 CTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGA 222408 |||||| ||||| |||||| | || ||||||||| | | | ||||| || || || Sbjct 2109265 CTTGAGCGTGTCGTAGATGCCGTTGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCACGA 2109324 Query 222409 CGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 ||||||||| | |||| || | |||||| ||||| ||||| ||||||| || ||| | Sbjct 2109325 CGACATCTGGGGCTTGGGGGTGCCGGCGTTGAACAGGGTGGGGGTGGCGTGCGTGAAG-A 2109383 Query 222469 GCCCCT-AGACATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCT 222527 ||| || ||||| || ||||||||||| | || || |||||| |||| ||| || Sbjct 2109384 GCCTCTGCGACATGAGGTCGTACGTCTCGATCACCTTGTCGATGTCGTCCTTGTGGATGC 2109443 Query 222528 GCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCAC 222567 || | | |||| ||||| ||| ||||||||||| Sbjct 2109444 CCACCGACACGCGCATGATCATGTGCTGCGGCCTCTCCAC 2109483 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 222037 CTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTC 222096 ||||||||||||||| |||||||||| || | || || || || | |||| ||| Sbjct 2108035 CTGCATGAAGAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTCGCGCGCTCGAGCTC 2108094 Query 222097 CACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAG 222156 ||||| ||| ||| |||| ||||| ||| | | ||||| ||||||||||||||||| Sbjct 2108095 GTTGCCGTGGTTCTTCTTCAGGTCCAAGAACGCCACGATGTCGGCGTGCCACGGCTCCAG 2108154 Query 222157 ATAGACGGC 222165 || ||||| Sbjct 2108155 GTACACGGC 2108163 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 221168 GTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATG 221227 ||||| || || | |||||||||||||||||||||||| || || |||||||||||| Sbjct 2104479 GTGAAGGGCTCAACGCTCTCGTTGTTGCCCAGGATCTGGGCAGTAGAGGCGGTGGGCATC 2104538 Query 221228 GGTGCCACCAGCAG 221241 || ||||||||||| Sbjct 2104539 GGCGCCACCAGCAG 2104552 >seq14 Length=3614499 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 25904 AGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACC 25962 |||||||||| || ||| || |||| || | |||||||| ||| || ||| Sbjct 1009264 AGGGCATCTTCTTTTCCGGAAGCTTCTGCG-CCGTGTTCTGGCTGAAGAAGCGAGGGCTG 1009322 Query 25963 ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGAT 26022 ||||||||||||| ||| || ||||| ||||||||| | || ||||||||||||| || Sbjct 1009323 ATGCCCGGGCTGTGCTTCTCGAACGAACTCATCAGCCGAGATGAGGGTCTCCACACCGAC 1009382 Query 26023 TTTGCCTGCCTGCT 26036 || || |||||||| Sbjct 1009383 TTCGCGTGCCTGCT 1009396 >seq11 Length=5521395 Score = 91.5 bits (100), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 221168 GTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATG 221227 ||||| || |||| ||||||||||||||||||||| || |||||| |||||||||||| Sbjct 2278190 GTGAATGGCTCGACGCTCTCGTTGTTGCCCAGGATTTGCGCCGTGGACGCGGTGGGCATG 2278131 Query 221228 GGTGCCACCAGCAGACTGTTGCGCAGTCCG 221257 || || | ||| || ||||||||| ||| Sbjct 2278130 GGGGCTAGCAGGAGCGAGTTGCGCAGCCCG 2278101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928830054588800