Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 4e-15 seq1 86.0 7e-12 >seq14 Length=3614499 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 65105 AGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCA 65164 |||| |||||||| ||||| |||||||| | | ||| |||||||||| || || | Sbjct 1009264 AGGGCATCTTCTTTTCCGGAAGCTTCTGCGCCGTGTTCTGGCTGAAGAAGCGAGGGCTGA 1009323 Query 65165 TGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 |||| || || |||||||| || ||||| || ||||||||||||||||||| Sbjct 1009324 TGCCCGGGCTGTGCTTCTCGAACGAACTCATCAGCCGAGATGAGGGTCTCCAC 1009376 >seq1 Length=3745584 Score = 86.0 bits (94), Expect = 7e-12 Identities = 266/409 (65%), Gaps = 6/409 (1%) Strand=Plus/Minus Query 175276 GGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTC 175335 || ||||||||||| || |||| | |||| ||| || ||||| || ||||| ||| Sbjct 2280530 GGCGCCAAGATCCCTCGCGGCGTGATCCTCGAGGGCCCACCCGGTACCGGTAAGACTCTC 2280471 Query 175336 CTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAAC 175395 |||| || ||| | || || || | || || |||||| ||| | | | Sbjct 2280470 ATCGCTCGTGCCGTGGCCGGCGAGGCTGGCGTGCCCTTCATCGCCACCTCCGGATCTGAG 2280411 Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 || || |||||||| || || |||||||| | | || ||||| | || || | || Sbjct 2280410 TTCGTTGAGATGTTCGTGGGCGTGGGTGCGGCACGCGTGCGCGACTTGTTCGACAAGGCG 2280351 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 || || || || || ||||||| || || || || || || ||| ||| ||| Sbjct 2280350 AAGGAGAACTCTCCGTGCATCATCTTCATCGACGAAATCGACGCCGTCGGCCGGCAGCGC 2280291 Query 175516 AGCGCTGGTGGTATG-CCAGCA--AATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 || | || ||| || || || ||||| | || || || | || || | ||| Sbjct 2280290 GGCA---GCGGCATGGCCGGCGGCAACGACGAACGCGAGCAGACGCTGAACCAGATGCTC 2280234 Query 175573 ACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGC 175632 |||||||| ||||| | | | | || | | || || || ||||| || || Sbjct 2280233 GTGGAGATGGACGGCTTCGTCGGCAACCCCGGTGTGATCGTCATGGCTGCCACCAACCGT 2280174 Query 175633 GTGGATATCCTTGATGACGCCCTCCTTCGCCCGGGTCGTTTTGATCGCA 175681 | |||||||| || ||||||||||| ||||| || || || || |||| Sbjct 2280173 ATCGATATCCTCGACGACGCCCTCCTCCGCCCCGGCCGCTTCGACCGCA 2280125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560129457600