Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq698 147 3e-30 seq8 131 2e-25 seq665 111 2e-19 seq12 89.7 7e-13 >seq698 Length=144905 Score = 147 bits (162), Expect = 3e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 195302 ATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTA 195361 || |||||||| | || || || ||||| ||||| || || ||||| || || ||||| Sbjct 138877 ATCGGTATCGACCTGGGCACGACCTACTCCTGTGTGGGCGTGTGGCAGAACGACCGTGTG 138818 Query 195362 GAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGAT 195421 ||||| ||| | || ||||| || ||||| || ||||| || ||||||||||| || || Sbjct 138817 GAGATCATCGCCAACGACCAGGGCAACCGCACGACTCCGTCCTACGTTGCCTTCACCGAG 138758 Query 195422 AATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACT 195481 | || || || | || |||||||| || || ||| || |||||| | | |||||| Sbjct 138757 ACGGAGCGCCTGATCGGCGATGCCGCCAAGAACCAGGTGGCGATGAACGCCACCAATACC 138698 Query 195482 GTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGT 195515 ||||||||||| ||||| || || || |||| || Sbjct 138697 GTCTTTGACGCCAAGCGGCTGATCGGCCGCAGGT 138664 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/269 (67%), Gaps = 3/269 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || || |||||||| |||||||| | || || Sbjct 137292 ACCGTGCCCGCGTACTTCAACGACTCCCAGCGCCAGGCGACCAAGGACGCCGGAGCCATC 137233 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 |||| || ||| | | || ||||| || ||||| || || || || || || || Sbjct 137232 TCGGGCCTCAACGTGATGCGCATCATCAACGAGCCAACCGCCGCGGCCATCGCGTACGGC 137173 Query 195839 CTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACG 195898 ||||||||| |||| ||| || || || | ||||| || || || || || || Sbjct 137172 CTGGACAAG---AAGGGCGAGGAGCGCAACGTGCTCATCTTCGACCTGGGCGGCGGAACC 137116 Query 195899 TTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGT 195958 || || || | || | || || | || || ||||| || ||||| || || || Sbjct 137115 TTCGACGTGAGCGTGCTGACCATCGAGGAGGGCATCTTCGAGGTGAAGGCCACCGCGGGG 137056 Query 195959 GATACTCATCTAGGTGGTGAAGATTTCGA 195987 || || || || || || || || ||||| Sbjct 137055 GACACCCACCTGGGAGGGGAGGACTTCGA 137027 >seq8 Length=4529048 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 418686 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418745 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 418746 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 418805 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 418806 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 418865 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | ||||| || || Sbjct 418866 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCTCCGTCTTCGTGGCGG 418912 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 418914 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418973 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 418974 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419033 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 419034 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 419093 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | ||||| || || Sbjct 419094 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTTCGTCTTCGTGGCGG 419140 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 420489 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420548 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 420549 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420608 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 420609 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420668 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | ||||| || || Sbjct 420669 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTTCGTCTTCGTGGCGG 420715 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 420717 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420776 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 420777 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420836 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 420837 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420896 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || ||||||||||| || ||||| || || | ||||| || || Sbjct 420897 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCTTCGTCTTCGTGGCGG 420943 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 420945 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCGTCG 421004 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 421005 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 421064 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || || || || ||||| | || |||||| Sbjct 421065 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 421124 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || ||||| || || Sbjct 421125 ATCCAGAAGGAGTCTACCCTGCACCTGGTGCT 421156 Score = 125 bits (138), Expect = 9e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| |||| Sbjct 420261 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420320 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 420321 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420380 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || ||||| | || |||||| Sbjct 420381 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420440 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || ||||||||||| || ||||| || || Sbjct 420441 ATCCAGAAGGAGTCTACGCTGCACCTGGTGCT 420472 Score = 120 bits (132), Expect = 4e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| | || Sbjct 419142 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCG 419201 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || || ||| Sbjct 419202 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419261 Query 171982 CAACGACTT-ATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 || || | | || || || || || ||||| || || || || ||||| | || ||||| Sbjct 419262 CAGCGGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAA 419321 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | | || ||||||||||| || ||||| || || | ||||| || || Sbjct 419322 CATCCAGAAGGAGTCTACCCTGCACCTGGTGCTTCGTCTTCGTGGCGG 419369 >seq665 Length=197211 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 |||| |||||||| || ||||| || || || || ||||||||||| || ||| | || | Sbjct 104465 TGCAGATCTTTGTCAAGACCCTCACGGGTAAGACCATCACCCTCGACGTCGAGCCTTCTG 104524 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||| ||||| | | || ||||| || || ||||| || || || ||||| |||| Sbjct 104525 ACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGC 104584 Query 171983 AACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACG 172042 |||| || || || || || || ||||| || || || || || || | || |||||| Sbjct 104585 AACGTCTGATCTTCGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCGGACTACAACA 104644 Query 172043 TTCAAAAGG 172051 | || |||| Sbjct 104645 TCCAGAAGG 104653 >seq12 Length=3842133 Score = 89.7 bits (98), Expect = 7e-13 Identities = 193/287 (67%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 195701 GTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACA 195760 ||||| | || || | || || ||||| ||||||| || || || || |||||||| Sbjct 3218185 GTGAAGAACGCGGTGATCACCGTGCCTGCATACTTCAACGACTCCCAGCGCCAGGCGACC 3218126 Query 195761 AAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCG 195820 |||||||| | || || ||||||| ||| | | | ||||| ||||| || || Sbjct 3218125 AAGGACGCCGGAGCCATCTCGGGTCTTAACGTGATGCGCAC-ATCAACGAACCGACCGCC 3218067 Query 195821 GCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTT 195880 || || || || || || ||||||||| |||| ||| || || || | ||||| Sbjct 3218066 GCGGCCATCGCGTACGGCCTGGACAAG---AAGGGCGAGGAGCGCAACGTGCTCATCTTC 3218010 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 || || || || || | || || || | || | | || | || || ||||| Sbjct 3218009 GACCTGGGCGGCGGCAACTTCGACGTGAGCGTGCTGACCGTCGAGGAGGGCATCTTCGAG 3217950 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| || ||||| ||||| || || || || || || ||||| Sbjct 3217949 GTGAAGGCCACCGCTGGCGATACCCACCTGGGCGGAGAGGACTTCGA 3217903 Score = 84.2 bits (92), Expect = 3e-11 Identities = 191/287 (67%), Gaps = 3/287 (1%) Strand=Plus/Minus Query 195701 GTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACA 195760 ||||| | || || | || || || || ||||||| || || || || |||||||| Sbjct 3091605 GTGAAGAACGCGGTGATCACCGTGCCCGCGTACTTCAACGACTCCCAGCGCCAGGCGACC 3091546 Query 195761 AAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCG 195820 |||||||| | || || | || || ||| | | || ||||| || || || || Sbjct 3091545 AAGGACGCCGGAGCCATCTCCGGCCTCAACGTGATGCGCATCATCAACGAGCCGACCGCC 3091486 Query 195821 GCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTT 195880 || || || || || || ||||||||| |||| ||| || || || | ||||| Sbjct 3091485 GCGGCTATCGCGTACGGCCTGGACAAG---AAGGGCGAGGAGCGCAACGTGCTCATCTTC 3091429 Query 195881 GATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAA 195940 || || || || || || || || || | || | || || | || || ||||| Sbjct 3091428 GACCTGGGCGGCGGAACCTTCGACGTGAGCGTGCTGACCATCGAGGAGGGCATCTTCGAG 3091369 Query 195941 GTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| || ||||| || || || || || || || || ||||| Sbjct 3091368 GTGAAGGCCACCGCTGGCGACACCCACCTGGGCGGAGAGGACTTCGA 3091322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657851956434400