Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq665 86.0 5e-12 seq8 86.0 5e-12 >seq665 Length=197211 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| || || || |||| ||||||| | Sbjct 106663 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 106722 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||||| ||||| || ||| | ||| ||| || Sbjct 106723 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 106782 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || || |||| |||||| Sbjct 106783 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 106842 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || | ||| ||||| | | ||||| || || Sbjct 106843 ATCCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGCCTGCGTGGCGG 106889 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| || || || |||| ||||||| | Sbjct 107119 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 107178 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||||| ||||| || ||| | ||| ||| || Sbjct 107179 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107238 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || | |||| |||||| Sbjct 107239 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAAC 107298 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || ||||| ||||| | | ||||| || || Sbjct 107299 ATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGTGGCGG 107345 >seq8 Length=4529048 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || ||||| ||||| ||| | || |||||| Sbjct 420945 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCGTCG 421004 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||||| ||||| || || | ||| ||| || Sbjct 421005 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 421064 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||| | | | || || |||| |||||| Sbjct 421065 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 421124 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| ||||| ||||| Sbjct 421125 ATCCAGAAGGAGTCTACCCTGCACCTGGTG 421154 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || || ||||| ||| | || |||||| Sbjct 418686 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418745 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||||| ||||| || || | ||| ||| || Sbjct 418746 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 418805 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || || |||| |||||| Sbjct 418806 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 418865 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || |||||| ||||| ||||| Sbjct 418866 ATCCAGAAGGAGTCTACGCTGCACCTGGTG 418895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | || || || ||||| ||| | || |||||| Sbjct 420261 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420320 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || |||||||| ||||| || || | ||| ||| || Sbjct 420321 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420380 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||| | | | || || |||| |||||| Sbjct 420381 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420440 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || |||||| ||||| ||||| Sbjct 420441 ATCCAGAAGGAGTCTACGCTGCACCTGGTG 420470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412835209986110