Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq665 95.1 8e-15 seq8 87.8 1e-12 >seq665 Length=197211 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 106073 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 106014 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||| || | || | || || ||||| Sbjct 106013 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 105954 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | |||||| || |||||||| | |||||||| | Sbjct 105953 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCT 105895 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 105894 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 105864 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 107100 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107041 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||| || | || | || || ||||| Sbjct 107040 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 106981 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | |||||| || |||||||| | |||||||| | Sbjct 106980 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCT 106922 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 106921 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106891 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| || || || ||||| |||| |||| || || ||||| || Sbjct 107538 CTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 107479 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| ||||||||| || | || | || || ||||| || ||||| |||| | Sbjct 107478 GATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGC 107420 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| || |||||||| | |||||||| || || || | || || | Sbjct 107419 CGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGA 107360 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 107359 CGAAGATCTGCAT 107347 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || || || ||||| |||| |||| || || ||||| || ||| Sbjct 105321 TTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 105262 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||| || | || | || || ||||| || ||||| |||| | ||| Sbjct 105261 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 105203 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | |||||| | |||||||| | |||||||| ||||| || | || || || || Sbjct 105202 GATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGAA 105143 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 105142 GATCTGCAT 105134 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 106872 CACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 106813 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||| || | || | || || ||||| Sbjct 106812 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 106753 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | |||||| | |||||||| | |||||||| | Sbjct 106752 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCT 106694 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 106693 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106663 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 107328 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTC 107269 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| ||||||||| || | || | || || ||||| Sbjct 107268 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 107209 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | |||||| | |||||||| | |||||||| | Sbjct 107208 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCT 107150 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 107149 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 107119 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || || || ||||| |||| |||| || || ||||| || ||| Sbjct 106279 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 106220 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 | ||||||||| || | || | || || ||||| || ||||| |||| | ||| Sbjct 106219 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGCCGTC 106161 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | |||||| | |||||||| | |||||||| || || || | || || || || Sbjct 106160 GATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAA 106101 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 106100 GATCTGCAT 106092 >seq8 Length=4529048 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || || || ||| || || |||||||| || || || ||||| | Sbjct 418901 ACGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 418842 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||| |||||||| || | || | ||| || || Sbjct 418841 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 418782 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||||| |||| | ||| | ||||| | |||||||| | |||| Sbjct 418781 GTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGA 418723 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | || || || ||||||||||| Sbjct 418722 TGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 418686 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || || || ||| || || |||||||| || || || ||||| | Sbjct 419129 ACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 419070 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||| |||||||| || | || | ||| || || Sbjct 419069 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 419010 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||||| |||| | ||| | ||||| | |||||||| | |||| Sbjct 419009 GTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGA 418951 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | || || || ||||||||||| Sbjct 418950 TGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 418914 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || || || ||| || || |||||||| || || || ||||| | Sbjct 420704 ACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 420645 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||| |||||||| || | || | ||| || || Sbjct 420644 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 420585 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||||| |||| | ||| | ||||| | |||||||| | |||| Sbjct 420584 GTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGA 420526 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | || || || ||||||||||| Sbjct 420525 TGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420489 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| || || || ||| || || |||||||| || || || ||||| | Sbjct 420932 ACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCC 420873 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 ||| |||| || || ||||| || |||| |||||||| || | || | ||| || || Sbjct 420872 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTT 420813 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || ||||| |||| | ||| | ||||| | |||||||| | |||| Sbjct 420812 GTCCTGGATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGA 420754 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | || || || ||||||||||| Sbjct 420753 TGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 420717 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 || || |||||||| || || || ||||| |||| |||| || || ||||| || ||| Sbjct 419558 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 419499 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 ||||||||||| || | || | ||| || ||||| || ||||| ||| || ||| Sbjct 419498 AAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC-ACGCCGTC 419440 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | ||||| | |||||||| | ||||| || || || || | || || || || Sbjct 419439 GATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAA 419380 Query 33741 GATCTGCAT 33749 ||||||||| Sbjct 419379 GATCTGCAT 419371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 420470 CACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 420411 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || | || | ||| || ||||| Sbjct 420410 CAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 420351 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | ||||| | |||||||| | ||||| || | Sbjct 420350 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCT 420292 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | || || || ||||||||||| Sbjct 420291 TACCCGTGAGGGTCTTGACGAAGATCTGCAT 420261 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| || || || ||||| |||| || Sbjct 421154 CACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTC 421095 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || |||||||| |||| |||||||| || | || | ||| || ||||| Sbjct 421094 CAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTG 421035 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||||| |||| | ||| | ||||| | |||||||| | ||||| || | Sbjct 421034 GATCTTCTGCTTCA-CGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCT 420976 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 420975 TGCCCGTGAGGGTCTTGACGAAGATCTGCAT 420945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328698912278400