Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq665 111 4e-19 seq8 102 2e-16 >seq665 Length=197211 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| ||| ||| Sbjct 106666 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCCGAC 106725 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 106726 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 106785 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 106786 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 106845 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || |||||||| || Sbjct 106846 CAGAAGGAGTCGACCCTTCACCTGGT 106871 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| || ||| Sbjct 107350 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCCGAC 107409 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 107410 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 107469 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 107470 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 107529 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || |||||||| Sbjct 107530 CAGAAGGAGTCGACCCTGCACCTTGT 107555 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| ||| ||| Sbjct 107122 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCCGAC 107181 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 107182 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 107241 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | | || |||||| || Sbjct 107242 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAACATC 107301 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 107302 CAGAAGGAGTCGACCCTGCACCTGGT 107327 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| || ||| Sbjct 105867 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCCGAC 105926 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 105927 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 105986 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | | || |||||| || Sbjct 105987 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAACATC 106046 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 106047 CAGAAGGAGTCGACCCTCCACCTGGT 106072 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| || ||| Sbjct 106894 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCCGAC 106953 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 106954 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 107013 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | | || |||||| || Sbjct 107014 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAACATC 107073 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 107074 CAGAAGGAGTCGACCCTGCACCTGGT 107099 Score = 91.5 bits (100), Expect = 3e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| ||| ||| Sbjct 106095 CAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCCGAC 106154 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 106155 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 106214 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 106215 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 106274 Query 206353 CAGAA 206357 ||||| Sbjct 106275 CAGAA 106279 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || ||||||||| | || ||||| ||| ||| Sbjct 105137 CAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTCTCGACGTGGAGCCTTCCGAC 105196 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 105197 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 105256 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | | || |||||| || Sbjct 105257 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTACAACATC 105316 Query 206353 CAGAA 206357 ||||| Sbjct 105317 CAGAA 105321 >seq8 Length=4529048 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 418689 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCGGAC 418748 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 418749 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 418808 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 418809 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 418868 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 418869 CAGAAGGAGTCTACGCTGCACCTGGT 418894 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 418917 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCGGAC 418976 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 418977 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 419036 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 419037 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 419096 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 419097 CAGAAGGAGTCTACCCTGCACCTGGT 419122 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 420264 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCGGAC 420323 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 420324 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 420383 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 420384 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 420443 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 420444 CAGAAGGAGTCTACGCTGCACCTGGT 420469 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 420492 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCGGAC 420551 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 420552 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 420611 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 420612 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 420671 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 420672 CAGAAGGAGTCTACCCTGCACCTGGT 420697 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 420720 CAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCGGAC 420779 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 420780 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 420839 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || || | || |||||| || Sbjct 420840 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACATC 420899 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||| || ||||| || Sbjct 420900 CAGAAGGAGTCTACCCTGCACCTGGT 420925 Score = 100 bits (110), Expect = 7e-16 Identities = 147/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| ||| ||| Sbjct 419145 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCGGAC 419204 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 419205 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAGCAG 419264 Query 206293 AGACTT-ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | ||||||||||| |||||| |||| || || | || || | || |||||| | Sbjct 419265 CGGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAACAT 419324 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| |||||||| || ||||| || Sbjct 419325 CCAGAAGGAGTCTACCCTGCACCTGGT 419351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181801569559670