Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq23 91.5 1e-13 seq665 87.8 2e-12 seq11 86.0 6e-12 >seq23 Length=3983565 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 148110 GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGG 148169 ||||||||||| ||||||||| | || | | |||| || ||||| |||| || || Sbjct 2109277 GTAGATGCCGTTGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCACGACGACATCTGGGG 2109336 Query 148170 AATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT 148229 | | || || || ||| |||||||| | |||||||| || | | || ||| Sbjct 2109337 CTTGGGGGTGCCGGCGTTGAACAGGGTGGGGGTGGCGTGCGTGAAGAGCCTCTGCGACAT 2109396 Query 148230 CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 | | |||||||| || | | ||||||||||| ||| ||||||| || ||||| Sbjct 2109397 GAGGTCGTACGTCTCGATCACCTTGTCGATGTCGTCCTTGTGGATGCCCACCGACACGCG 2109456 Query 148290 CATGAGCATGTGCTGTGG 148307 ||||| ||||||||| || Sbjct 2109457 CATGATCATGTGCTGCGG 2109474 >seq665 Length=197211 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | | ||||| || || ||||||||||| || ||| Sbjct 106884 ACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 106825 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 106824 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCC 106765 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| || | || |||| |||||||| |||| Sbjct 106764 CTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAG 106705 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 106704 AGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 106662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | | ||||| || || ||||||||||| | ||| Sbjct 106085 ACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 106026 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 106025 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCC 105966 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| || | || |||| |||||||| |||| Sbjct 105965 CTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAG 105906 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 105905 AGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 105863 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | | ||||| || || ||||||||||| | ||| Sbjct 107112 ACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 107053 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 107052 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCC 106993 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| || | || |||| |||||||| |||| Sbjct 106992 CTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAG 106933 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 106932 AGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 106890 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | |||| || | | | ||||| || || ||||||||||| | ||| Sbjct 107340 ACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 107281 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || || || || ||||| Sbjct 107280 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCC 107221 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || || |||| || | || |||| |||||||| |||| Sbjct 107220 CTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAG 107161 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || || || || || | ||| ||||||||| Sbjct 107160 AGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 107118 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || || || ||||| || |||| Sbjct 107540 GACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCG 107481 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || || || || ||||| || || || || || || |||| Sbjct 107480 AAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACG 107421 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 || | || |||| |||||||| |||| || | ||| || || || || || || Sbjct 107420 CCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTG 107361 Query 132110 ATGAAAATCTGCATG 132124 | ||| ||||||||| Sbjct 107360 ACGAAGATCTGCATG 107346 >seq11 Length=5521395 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 147489 CTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCC 147548 ||| |||| |||| |||||| | ||| || | ||| |||||| | | || ||| || Sbjct 2274903 CTCGTCGGGGTCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCC 2274844 Query 147549 CAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCC 147608 ||| || | ||| ||||| || | ||||||||||| ||||| ||||||||||| ||| Sbjct 2274843 CAAGTTCTTCTGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTGCC 2274784 Query 147609 GGTCTCGACTTG 147620 ||||| || || Sbjct 2274783 AGTCTCAACCTG 2274772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476603633797200