Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 170 3e-36 seq820 165 1e-34 seq729 152 7e-31 seq1240 143 4e-28 seq14 143 4e-28 seq11 105 1e-16 seq23 91.5 2e-12 seq26 86.0 9e-11 >seq27 Length=4309624 Score = 170 bits (188), Expect = 3e-36 Identities = 189/249 (76%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 197762 TCGTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGT-----A 197816 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 197817 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 197875 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| ||||| | || | | |||| Sbjct 197876 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCAACCCTGTC--CTCCCGCG 197933 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || |||||||||||||||||||||| | | ||| || || |||| ||||||||| |||| Sbjct 197934 AGGTCCAGACCGCCGTGCGCCTGATGCTTCCCGGAGAGCTCGCCAAGCACGCCGTTTCCG 197993 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 197994 AGGGCACCA 198002 Score = 165 bits (182), Expect = 1e-34 Identities = 188/249 (76%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 155344 TCGTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGT-----A 155290 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 155289 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 155231 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | || | | |||| Sbjct 155230 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTC--CTCCCGCG 155173 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || |||||||||||||||||||||| | | ||| || || |||| ||||||||| |||| Sbjct 155172 AGGTCCAGACCGCCGTGCGCCTGATGCTTCCCGGAGAGCTCGCCAAGCACGCCGTTTCCG 155113 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 155112 AGGGCACCA 155104 Score = 156 bits (172), Expect = 6e-32 Identities = 186/249 (75%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 558482 TCGTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGT-----A 558428 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 558427 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 558369 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | || | | |||| Sbjct 558368 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTC--CTCCCGCG 558311 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||||||||||||||| || | | ||| || || |||| ||||||||| |||| Sbjct 558310 AGGTGCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAAGCACGCCGTTTCCG 558251 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 558250 AGGGCACCA 558242 Score = 156 bits (172), Expect = 6e-32 Identities = 186/249 (75%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | ||||||||||||||||||||||| |||||| |||| | | Sbjct 584368 TCGTACTCGTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGT-----A 584422 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 584423 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 584481 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | || | | |||| Sbjct 584482 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTC--CTCCCGCG 584539 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || | ||||||||||||||||| || | | ||| || || |||| ||||||||| |||| Sbjct 584540 AGGTGCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAAGCACGCCGTTTCCG 584599 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 584600 AGGGCACCA 584608 >seq820 Length=761978 Score = 165 bits (182), Expect = 1e-34 Identities = 188/249 (76%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 || ||||| |||| ||||||||||||||||||||||| |||||| |||| | | Sbjct 268749 TCATACTCCTCCTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGT-----A 268803 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| ||||||||||||||| |||||||| || |||| ||| | Sbjct 268804 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTTATCAACGACGTGTTCGAGCGCGTG 268862 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | || | |||||| Sbjct 268863 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTGTC--CTCGCGCG 268920 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || ||||||||||||||||||| || | | ||| || || |||| ||||||||| |||| Sbjct 268921 AGGTCCAGACCGCCGTGCGCCTCATGCTCCCCGGGGAGCTCGCCAAGCACGCCGTGTCCG 268980 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 268981 AGGGCACCA 268989 >seq729 Length=96744 Score = 152 bits (168), Expect = 7e-31 Identities = 185/249 (74%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 ||||||||||| | |||||||||||||| |||||||| |||||| || | | | Sbjct 80939 TCGTACTCGTCGTACATCTACAAGGTGCTTAAGCAGGTCCACCCCGACACAGGT-----A 80885 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 80884 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 80826 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | ||| | |||| Sbjct 80825 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTATCATCCCGCG-- 80768 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || ||||||||||||||||||| || | | ||| || || |||| ||||||||| |||| Sbjct 80767 AGGTCCAGACCGCCGTGCGCCTCATGCTTCCCGGAGAGCTCGCCAAGCACGCCGTTTCCG 80708 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 80707 AGGGCACCA 80699 >seq1240 Length=908089 Score = 143 bits (158), Expect = 4e-28 Identities = 183/249 (73%), Gaps = 10/249 (4%) Strand=Plus/Plus Query 724896 TCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCA 724955 |||||||| || | ||||||||||||||||||||||| |||||| |||| | Sbjct 526276 TCGTACTCCTCGTACATCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGGA-----A 526330 Query 724956 TCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATC 725015 || ||||| |||||| |||||||||||||| |||||||| || |||| ||| | Sbjct 526331 TC-TCCAAGCGCGGCATGTCCATCATGAACTCGTTCATCAACGACGTGTTCGAGCGCGTG 526389 Query 725016 GGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGC--GCAACACGATCGGCACGCGCG 725073 | | |||| |||| || | |||| ||||||| || || | || | | |||| Sbjct 526390 GCCGGCGAGTCCGGCAAGCTCACCCGCTACAACAAGAAGGCGACCCTCTC--CTCCCGCG 526447 Query 725074 AGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCG 725133 || ||||||||||||||||||| || | | || || || |||| ||||||||| || | Sbjct 526448 AGGTCCAGACCGCCGTGCGCCTCATGCTCCCGGGAGAGCTCGCCAAGCACGCCGTGTCGG 526507 Query 725134 AGGGCACCA 725142 ||||||||| Sbjct 526508 AGGGCACCA 526516 >seq14 Length=3614499 Score = 143 bits (158), Expect = 4e-28 Identities = 156/202 (77%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 1456572 TGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGT 1456631 |||| |||| ||| |||||||||||| | | ||||||| | |||||||| || || || Sbjct 1009988 TGCCCGTGGAGCTGATCGGCATGAACAGCGC-GCTCATGCGACAGTACATCGAGTTCTG- 1010045 Query 1456632 CGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGT 1456691 ||||||||| ||||| || ||| ||||||| ||||| | ||| || ||||||||| Sbjct 1010046 CGCCGACCGGCTGCTGATGGAGCTTGGCTGCG-AGAAGAAGTACAACTCGACCAACCCGT 1010104 Query 1456692 TCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-G 1456750 || ||||||||| |||| |||||| |||| ||||||||||| |||||| | || | Sbjct 1010105 TCGACTGGATGGAGATGATTTCGCTCCAGGGGAAGACCAACTTCTTCGAGAAGAGAGTCG 1010164 Query 1456751 GCGAGTACGCCAAGGCCGGCGT 1456772 | |||||| |||| | ||||| Sbjct 1010165 GGGAGTACAGCAAGTCGGGCGT 1010186 Score = 113 bits (124), Expect = 6e-19 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 1455938 AGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACG 1455997 ||||| |||| || ||| | | ||| |||| | | ||||| || | || |||| Sbjct 1008487 AGAACTTGGCAAGCAACTTCAGCAGCGAGATCCAGCTCTCGGAGGCCCGGTGCTTCTACG 1008546 Query 1455998 GGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCT 1456057 | ||||||||||||||||| ||||||||| || ||| |||||||||||||| | Sbjct 1008547 GCTTCCAGATCGCCATCGAGAACATCCACAGCGAGGTGTACAGCCTCCTGATCGACACGT 1008606 Query 1456058 ACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCC 1456112 ||||||||||| | | ||||||| ||||||||| |||||| || ||||| || Sbjct 1008607 ACGTCAAGGACGCCGCCGAGAAGACCCACCTCTTCAACGCCATGGAGACGGTCCC 1008661 Score = 105 bits (116), Expect = 1e-16 Identities = 120/157 (76%), Gaps = 8/157 (5%) Strand=Plus/Plus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| | |||||| || ||||| ||||| | ||| ||||| || |||||| | ||||| | Sbjct 1007892 TGGCAGATGTAC-AAGAAGGCGGAGGCGTGCTTCTGGACGGCGGAGGAGCTAGACCTTGC 1007950 Query 1455839 ---CGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 || | ||| || |||||| | ||||| ||||||||| | || ||| ||||||| Sbjct 1007951 GCACGACCACAAGG---ACTGGGAGGGGCTGACGGACGACGAGAGACACTTCGTCAAGCA 1008007 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 |||||||||| || ||||| || ||||| |||||||| Sbjct 1008008 CGTCCTCGCC-TTCTTCGCGGCTAGCGACGGCATCGT 1008043 >seq11 Length=5521395 Score = 105 bits (116), Expect = 1e-16 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 ||||||||| |||||||||| || ||||| ||||| | | |||| | || Sbjct 2271420 CAGTGCGCGTGCATCTCCAAGTTCGCGGGCGGAATCGGAGTCTCGATCCACAGCATCCGG 2271479 Query 260087 GCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTT 260146 || ||| | |||||||||| || |||||||| |||||||| || ||||||||||| Sbjct 2271480 GCGACGGACTCCTACGTGGCCGGGTCCAACGGCTCTTCCAACGGTCTCGTGCCCATGCTC 2271539 Query 260147 CGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || || |||||||| || ||||||||||||||| Sbjct 2271540 AGAGTCTTCAACGACACCGCCCGCTACGTCGACCAG 2271575 >seq23 Length=3983565 Score = 91.5 bits (100), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 260027 CAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGC 260086 |||||||| | ||||||||| || || || ||||| | | ||| | |||||| Sbjct 2108617 CAGTGCGCCCAGATCTCCAAGCACGCGGGAGGGATCGGCCTGTCGATCCACCACGTGCGC 2108558 Query 260087 GCCGCGGGCGCCTACGTG-GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCT 260145 || || | | ||| | ||||| ||||||||| || |||||| | ||||||||||| Sbjct 2108557 GCGGCCAACTCTTACATCCGCGGG-ACCAACGGCAGCTCGAACGGCATCGTGCCCATGCT 2108499 Query 260146 TCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||| || ||| |||| ||||||||||| |||||| Sbjct 2108498 GCGCGTCTTCAACAACACCGCGCGCTACGTGGACCAG 2108462 Score = 87.8 bits (96), Expect = 3e-11 Identities = 116/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||| ||||||||||||||| | | ||| |||||||| ||||||||||||||| || Sbjct 2108190 GGCGGAGGCAAGCGCAAGGGCTCGATCGCCGTGTACCTGGAGCCGTGGCACGCCGACATC 2108131 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | ||||||| || |||||||||||||| ||| || | ||||| | Sbjct 2108130 GTGGCGTTCTTGGACCTGAAGAAGAACCACGGCAA-CGAGCTCGA-----GCGCGCGAGG 2108077 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGC 261947 || || || |||| | |||||| |||||| || |||| Sbjct 2108076 GACCTTTTCTACGCCATGTGGATCCCCGACCTCTTCATGC 2108037 Score = 87.8 bits (96), Expect = 3e-11 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 259874 GTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTC 259933 ||| ||| || ||||| |||||||||| | | ||||| || || ||||| || Sbjct 2109417 GTGATCGAGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCCACCCCCACCCTG 2109358 Query 259934 TTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCC 259993 || || |||||||| || || |||| ||||||||||| ||| | |||||||| Sbjct 2109357 TTCAACGCCGGCACCCCCAAGCCCCAGATGTCGTCGTGCTTCCTGCTCACCATGAAGGAG 2109298 Query 259994 GATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 || ||| | |||||||| ||||||||||||||| Sbjct 2109297 GACAGCATCAACGGCATCTACGACACGCTCAAGCAG 2109262 >seq26 Length=7107661 Score = 86.0 bits (94), Expect = 9e-11 Identities = 97/126 (77%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 |||||| |||||||||| ||||| |||| ||||| | ||||||||||| | || || Sbjct 2027566 CTGCTTCCCCATGGCCGATTGGTATGTGTTTCGCGGGGACTGGTTGTGGTCCGGGAAGGG 2027625 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGA-GCAGCGGGTGGACCTCGACGTGCGTAAAGG 1601477 ||||||||| ||||| |||| || || | || | ||||||| |||| ||| || ||| Sbjct 2027626 GATGATGGAGGCGCACACGCCGAGGATCATGCTG-GGGTGGATCTCGCAGTGGGTGTAGG 2027684 Query 1601478 -GCTCG 1601482 ||||| Sbjct 2027685 TGCTCG 2027690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177688706165740