Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq14 100 4e-16 seq11 96.9 4e-15 >seq1 Length=3745584 Score = 114 bits (126), Expect = 2e-20 Identities = 274/410 (67%), Gaps = 12/410 (3%) Strand=Plus/Plus Query 14063 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 14122 || || ||||| || |||||||||||||||||||| |||||||| || ||||| || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 14123 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAG---TTGA 14179 || ||||| | | || | | | | ||||| |||||||| || ||| || Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTC---CACGAGCATCTGG 2280243 Query 14180 TTGATGGTTTGTTCGCGTTCATCATT--CGCAGG-CATACCACCCGCACTGCGTTGCTTA 14236 || | || || |||||||| || || ||| || ||| || | | ||| ||| Sbjct 2280244 TTCAGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGC---TGCCGCGCTGCCGG 2280300 Query 14237 CCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA 14296 ||||||||||| ||||| |||||||| | ||| || || || || || || Sbjct 2280301 CCGACGGCGTCGATTTCGTCGATGAAGATGATGCACGGAGAGTTCTCCTTCGCCTTGTCG 2280360 Query 14297 AAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG 14356 || | || ||||| | ||||| || ||||| |||||||| || || | | || Sbjct 2280361 AACAAGTCGCGCACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCCG 2280420 Query 14357 GAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTC 14416 || ||||||||| ||| || || || || | ||| || |||| ||| ||||| Sbjct 2280421 GAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTTA 2280480 Query 14417 CCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC 14466 || || || ||| || |||| | | || || |||||| |||| || Sbjct 2280481 CCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 >seq14 Length=3614499 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||||||||| || ||| ||||||||| |||||||||||||| || ||||| || || Sbjct 1009376 GTGGAGACCCTCATCTCGGCTGATGAGTTCGTTCGAGAAGCACAGCCCGGGCATCAGCCC 1009317 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||||||||| |||||| | || || || || || |||||||| |||| Sbjct 1009316 TCGCTTCTTCAGCCAGAACACGGCGCAGAAGCTTCCGGAAAAGAAGATGCCCT 1009264 >seq11 Length=5521395 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118749 TCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTT 118808 || |||||||| || || |||||||| | ||| || ||| ||||||||||||||||| Sbjct 2274893 TCGGTGTACTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCCCAAGTTCTTC 2274834 Query 118809 TGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTC 118864 || || ||| |||| ||||| |||||| | |||||||| ||||| || ||||| Sbjct 2274833 TGGTTGCTCTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTGCCAGTCTC 2274778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618425382341200