Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq23 96.9 4e-15 seq14 87.8 2e-12 seq1 87.8 2e-12 >seq23 Length=3983565 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104211 TGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACA 104270 || |||| | || ||| ||||| ||||||||||| | | || || || ||| |||| Sbjct 2109485 TGGTGGAGAGGCCGCAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGACGACA 2109426 Query 104271 TTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACAC 104330 | || || | ||||| |||||| ||||| || | | |||| ||||| || | Sbjct 2109425 TCGACAAGGTGATCGAGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCCACCC 2109366 Query 104331 CAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCA 104390 | ||||| ||||| || || || || | ||||| ||||| |||||||| || ||| Sbjct 2109365 CCACCCTGTTCAACGCCGGCACCCCCAAGCCCCAGATGTCGTCGTGCTTCCTGCTCACCA 2109306 Query 104391 ACAAGGAGGACTCAATCAACGGTATCTA 104418 ||||||||| |||||||| ||||| Sbjct 2109305 TGAAGGAGGACAGCATCAACGGCATCTA 2109278 >seq14 Length=3614499 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 |||| |||||||| || || ||||||||| | | ||||| ||||||||||| || | Sbjct 1009264 AGGGCATCTTCTTTTCCGGAAGCTTCTGCGCCGTGTTCTGGCTGAAGAAGCGAGGGCTGA 1009323 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||| || || |||||||| ||||| || ||| || || ||||| |||||| Sbjct 1009324 TGCCCGGGCTGTGCTTCTCGAACGAACTCATCAGCCGAGATGAGGGTCTCCAC 1009376 >seq1 Length=3745584 Score = 87.8 bits (96), Expect = 2e-12 Identities = 271/411 (66%), Gaps = 14/411 (3%) Strand=Plus/Plus Query 9524 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9583 || || ||||| || || || ||||| ||||| || |||||||| | || || || || Sbjct 2280127 CGGTCGAAGCGGCCGGGGCGGAGGAGGGCGTCGTCGAGGATATCGATACGGTTGGTGGCA 2280186 Query 9584 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9643 || ||||| | | ||| | | | || || |||||||| | | ||||| Sbjct 2280187 GCCATGACGATCACACCGGGGTTGCCGACGAAGCCGTCCATCTCCACGAGCATCTGGTTC 2280246 Query 9644 ATAGTTTGTTCCCGTTCATCATT--CGCTGGC-ATACCACCAGCACTGCGTTGCTTTCCC 9700 | || || || ||||| || || ||| ||| || || | | ||| ||| || Sbjct 2280247 AGCGTCTGCTCGCGTTCGTCGTTGCCGCCGGCCATGCCGCTGCC---GCGCTGCCGGCCG 2280303 Query 9701 ACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTT--CAA 9758 ||||| || || || || ||||||| |||||| || || || | | || ||| | | Sbjct 2280304 ACGGCGTCGATTTCGTCGATGAAGATGATGCACGGA-GAGTT-CTCCTTCGCCTTGTCGA 2280361 Query 9759 AGAGATCCCGTACACGCTTGGCGC--CCACACCAACAAACATCTCCACAAAGTTTGCGGC 9816 | | || || ||||| || ||| |||| || || |||||||| || || | | | Sbjct 2280362 ACAAGTCGCG--CACGCGTGCCGCACCCACGCCCACGAACATCTCAACGAACTCAGATCC 2280419 Query 9817 GGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 ||| ||||||||| || || || || || | ||| || |||| |||||||| Sbjct 2280420 GGAGGTGGCGATGAAGGGCACGCCAGCCTCGCCGGCCACGGCACGAGCGATGAGAGTCTT 2280479 Query 9877 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 9927 ||| ||||| || ||| |||||| | || || || ||||||||||| Sbjct 2280480 ACCGGTACCGGGTGGGCCCTCGAGGATCACGCCGCGAGGGATCTTGGCGCC 2280530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583251540734800