Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq16 154 2e-32 seq23 152 6e-32 seq11 116 4e-21 seq33 96.9 4e-15 seq475 91.5 2e-13 >seq16 Length=8064047 Score = 154 bits (170), Expect = 2e-32 Identities = 291/426 (68%), Gaps = 9/426 (2%) Strand=Plus/Minus Query 79383 CATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTC 79442 |||||| | ||| | || |||||| | |||||| ||||| | ||| ||||| Sbjct 4536569 CATGAACAAGTCGGAGACCCACAGCCCATAGAAGAGATCGCGCGCTCTCATGAGCTCGTT 4536510 Query 79443 GCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATA 79502 ||| | |||| || || || || |||| ||||||||||||||| |||| ||| Sbjct 4536509 GCCGTTGTTCTTTTTCAAGTCCAGGAACTCCAGTATGTCGGCGTGCCACATTTCCAAATA 4536450 Query 79503 GATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTT 79562 ||||||||||| ||||| || || ||| |||| |||| | ||| ||| ||| | Sbjct 4536449 CATGGCGAACGACCCCTTTCG---GCGCCCGGCCTGATTGATGAACCTGGCGGTGGACTC 4536393 Query 79563 GAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGT 79622 ||| ||| || | |||||| |||||||| ||| || || || || ||||| | Sbjct 4536392 GAAGCATCGCAGGAGGGGCACTATGCCGTCACTGACCCCATTTGTGCCTTTGATGTACGA 4536333 Query 79623 ACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTG 79682 ||| | || || ||||| ||| | || ||||| || || | | || ||||| | Sbjct 4536332 ACCCTTGGCTCGTATGTTGGAGACGGAGAGACCGATCCCTCCCGCGAATTTAGAGATCTT 4536273 Query 79683 CGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAG 79742 ||| || |||||||| ||||| || || || | || ||||| | ||| || | || Sbjct 4536272 CGCCGTCTGTTTGAGCGTGTCGTAAATACCATCCACGGAATCGTCTTGCATGGCCAGGAG 4536213 Query 79743 GAAGCAGCTCGACATCTGTGGGTTGTTC---GTACCGGCGTTGAAGAGGGTCGGCGTCGC 79799 ||||| ||| || | ||||||| ||||||||||||||||| ||||| || || Sbjct 4536212 AAAGCA---CGAGCTCAGCTGGTTGTTGACGGTACCGGCGTTGAAGAGCGTCGGGGTGGC 4536156 Query 79800 GTGCGT 79805 || || Sbjct 4536155 ATGTGT 4536150 Score = 96.9 bits (106), Expect = 4e-15 Identities = 339/522 (65%), Gaps = 13/522 (2%) Strand=Plus/Plus Query 19105 TCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCG 19164 |||| || | || |||||||| || ||||| || || || ||| | | | || | Sbjct 4536056 TCAGCACATGTTGATGCGAGTGGCCGTCGGGATTCACAAGGATGACATAGAGAGCGTGCT 4536115 Query 19165 CGAGACATACGACCTGAT-GAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCA 19223 ||| || ||| ||| || ||| || | | || || || || ||||| || |||| Sbjct 4536116 CGATACGTAC-ACCGAATTGAGTGAGCGCTGGATGACACATGCCACCCCGACGCTCTTCA 4536174 Query 19224 ACGCCGGTAC---GAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATG 19280 |||||||||| ||||||| || || ||| ||| | ||| |||| ||| | || | Sbjct 4536175 ACGCCGGTACCGTCAACAACCAGCTGAGCTCGTGCTTTCTCC---TGGCCATGCAAGACG 4536231 Query 19281 ACAGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCG 19340 | | | || || || ||||| |||||||| || ||| | ||||| || | | | Sbjct 4536232 ATTCCGTGGATGGTATTTACGACACGCTCAAACAGACGGCGAAGATCTCTAAATTCGCGG 4536291 Query 19341 GGGGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGA 19400 | || ||||| || | ||| || || || | | ||| | ||||| || || | Sbjct 4536292 GAGGGATCGGTCTCTCCGTCTCCAACATACGAGCCAAGGGTTCGTACATCAAAGGCACAA 4536351 Query 19401 ACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 | || || ||||| || || || | || || |||| | ||| ||||||| | Sbjct 4536352 ATGGGGTCAGTGACGGCATAGTGCCCCTCCTGCGATGCTTCGAGTCCACCGCCAGGTTCA 4536411 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 |||| |||| || || || ||||| ||||||||||| || | || ||||||| Sbjct 4536412 TCAATCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAATGTGGCACG 4536468 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| | |||| ||||| || || |||| | || ||||| ||| | | Sbjct 4536469 CCGACATACTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGC 4536528 Query 19581 GCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATG 19621 |||| |||||| | || | ||||| | | ||| | |||||| Sbjct 4536529 GCGATCTCTTCTATGGGC-TGTGGGTCTCCGACTTGTTCATG 4536569 >seq23 Length=3983565 Score = 152 bits (168), Expect = 6e-32 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || ||||||||| ||||||||||| | ||| ||| |||||||| | || ||||||||| Sbjct 2109262 CTGCTTGAGCGTGTCGTAGATGCCGTTGATGCTGTCCTCCTTCATGGTGAGCAGGAAGCA 2109321 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||||||||| || ||| || ||||||||||| ||||| || || ||||||||||| Sbjct 2109322 CGACGACATCTGGGGCTTGGGGGTGCCGGCGTTGAACAGGGTGGGGGTGGCGTGCGTGAA 2109381 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGAT 79868 || | | || ||| || ||||||||||| | || || |||||| |||||| Sbjct 2109382 GAGCCTCTGCGACATGAGGTCGTACGTCTCGATCACCTTGTCGATGTCGTCCTTGTGGAT 2109441 Query 79869 GCCGACCGCGACGCGCATGAAGAGGTACTGGGGCGTCTCGCCGACATTCAGGTAGCCCTT 79928 ||| |||| |||||||||| | || ||| ||| |||| | || ||| || |||| Sbjct 2109442 GCCCACCGACACGCGCATGATCATGTGCTGCGGCCTCTCCACCACCTTCCCGTCAGCCTT 2109501 Query 79929 CTGCAGG 79935 ||||| Sbjct 2109502 GAGCAGG 2109508 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 19097 GAGACGCCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCG 19156 |||| ||| ||| || | ||||||| || |||| |||||||| |||||| || Sbjct 2109480 GAGAGGCCGCAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGACGACATCGAC 2109421 Query 19157 CGAGTCCGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACC 19216 || |||||| |||||||| ||| |||| | ||||||||||||| || || ||| Sbjct 2109420 AAGGTGATCGAGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCCACCCCCACC 2109361 Query 19217 CTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAG 19276 || ||||||||||| || ||| || ||||||||| || ||||| | | |||||| Sbjct 2109360 CTGTTCAACGCCGGCACCCCCAAGCCCCAGATGTCGTCGTGCTTCCTGCTCACCATGAAG 2109301 Query 19277 GATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 || |||||||| | ||||||||||| ||||||||| || Sbjct 2109300 GAGGACAGCATCAACGGCATCTACGACACGCTCAAGCAG 2109262 Score = 114 bits (126), Expect = 1e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 79380 CTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTC 79439 || |||||||||||| |||||||||| ||| ||| ||||| | ||| ||| Sbjct 2108035 CTGCATGAAGAGGTCGGGGATCCACATGGCGTAGAAAAGGTCCCTCGCGCGCTCGAGCTC 2108094 Query 79440 GTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAG 79499 || ||| |||||| ||| || | || ||| |||||||||||||||||||||||| Sbjct 2108095 GTTGCCGTGGTTCTTCTTCAGGTCCAAGAACGCCACGATGTCGGCGTGCCACGGCTCCAG 2108154 Query 79500 ATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCT 79537 || | ||||| ||| |||||||||||||| ||||||| Sbjct 2108155 GTACACGGCGATCGAGCCCTTGCGCTTGCCTCCGCCCT 2108192 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||| | || || |||||||||||||| | ||||||||||||||| Sbjct 2106590 CTCCACGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCCCAGGTTCTTCTGGTTGCT 2106649 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| ||| || ||||||||||| |||||| || || || ||||| ||||| Sbjct 2106650 CTTGAAGTTGCACGCGTCCTTGTACAGCATGTAAGGGGTGCCTGTCTCCACCTG 2106703 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 19467 AGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACG 19526 |||| || ||||| |||||||||||| ||||| | ||||| ||||| |||||||| ||| Sbjct 2108192 AGGGCGGAGGCAAGCGCAAGGGCTCGATCGCCGTGTACCTGGAGCCGTGGCACGCCGACA 2108133 Query 19527 TCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACC 19586 || ||| ||| | || ||| |||||| || ||||| |||| | |||| Sbjct 2108132 TCGTGGCGTTCTTGGACCTGAAGAAGAACCACGGCAACGAGCTCGAGCGCGCGAGGGACC 2108073 Query 19587 TCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAG 19624 | ||| ||| ||||||| || ||||| |||||| || Sbjct 2108072 TTTTCTACGCCATGTGGATCCCCGACCTCTTCATGCAG 2108035 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/159 (73%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 20669 GACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATG 20728 |||| |||||| || || || || |||||| ||| |||||||| | || || |||| Sbjct 2103040 GACA-GGCGGCGGACCGAGGGGCGTACATCTGCCAATCCCAGTCCATGAACGTGCACATG 2102982 Query 20729 GAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTC 20788 | | | | | | | |||| || ||||||||| | |||| ||| | ||||| ||| Sbjct 2102981 GCGGAGGCATCCTTCGGGAAGTTGTCCTCCATGCACTTCTACGCGTGGAAGAAGGGCCTC 2102922 Query 20789 AAGACGGGCATGTACTATCTGCGGACCCGAGCCAAGGCC 20827 ||||| ||||||||||| || || ||||| |||||||| Sbjct 2102921 AAGACCGGCATGTACTACCTCCGCACCCGCCCCAAGGCC 2102883 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/158 (73%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 78178 GCCTTGGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTAC 78237 ||||||| ||| || || | ||||||||||| |||||||| ||||||||||| |||| Sbjct 2102884 GCCTTGGGGCGGGTGCGGAGGTAGTACATGCCGGTCTTGAGGCCCTTCTTCCACGCGTAG 2102943 Query 78238 AGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGG 78297 | |||||| |||| ||| | | | | | ||||| | ||| | |||||| Sbjct 2102944 AAGTGCATGGAGGACAACTTCCCGAAGGATGCCTCCGCCATGTGCACGTTCATGGACTGG 2103003 Query 78298 GACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTC 78335 || ||| ||||||||| || ||||| |||||| |||| Sbjct 2103004 GATTGGCAGATGTACGCCCCTCGGTCCGCCGCC-TGTC 2103040 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||||| ||||| ||||| || |||||| ||||||||||| ||| |||| || Sbjct 2106703 CAGGTGGAGACAGGCACCCCTTACATGCTGTACAAGGACGCGTGCAACTTCAAGAGCAAC 2106644 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||||||||| | ||| | |||||||| |||||||| || || || ||| ||||| || Sbjct 2106643 CAGAAGAACCTGGGCACCATCAAGTCCTCCAACCTCTGCACGGAGATCGTGGAGTACACC 2106584 Query 19913 AAGCCGGACGAG 19924 ||||||||| Sbjct 2106583 GCTCCGGACGAG 2106572 >seq11 Length=5521395 Score = 116 bits (128), Expect = 4e-21 Identities = 94/114 (82%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||||||||| || ||||| | || || |||||||||||||| | ||||||||||||||| Sbjct 2274885 CTCGATGATCTCCGTGCAGAGGTTGGAGGACTTGATGGTGCCCAAGTTCTTCTGGTTGCT 2274826 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||| ||| || ||||||||| | |||||||||||| || ||||||||||| Sbjct 2274825 CTTGCTGTTGCACGCGTCCTTGAACAGCATGTACGGCGTGCCAGTCTCAACCTG 2274772 Score = 102 bits (112), Expect = 9e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||| | |||||||| ||| ||| | ||||||| ||||| | ||||| || ||||| Sbjct 2270852 CGAGTCGTACGACCTAATGTCGCAGCGGCTCTTCACCCACGCCTCCCCGACGCTGTTCAA 2270911 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 |||||| || ||||||| |||| ||||| ||||| | | || || ||||| Sbjct 2270912 CGCCGGGACCCCTCGCCCGCAGCTGTCCAGCTGCTTCCTGCTCAACGTCAAAGAGGACAG 2270971 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAG 19315 ||| |||||||||||||| ||||||||| || Sbjct 2270972 CATCGAGGGCATCTACGACACGCTCAAGCAG 2271002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || ||||||||| ||||||||||||||||| ||| || || | || ||||||||| Sbjct 2271002 CTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGACGTTGAGCAGGAAGCA 2270943 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 ||| |||| ||| ||| || ||||||||||| || ||||| | ||||| ||||| Sbjct 2270942 GCTGGACAGCTGCGGGCGAGGGGTCCCGGCGTTGAACAGCGTCGGGGAGGCGTGGGTGAA 2270883 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGC 79846 || | || ||| || ||||||| ||| || ||| Sbjct 2270882 GAGCCGCTGCGACATTAGGTCGTACGACTCGATGGCGC 2270845 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 79456 CGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAA 79515 || || || || ||| | | ||||||||||||||||||||| | || |||||||| ||| Sbjct 2272631 CGAAGGTCAAGGAAGGCGAAAATGTCGGCGTGCCACGGCTCCCGGTACATGGCGAAAGAA 2272572 Query 79516 CCCTTGCGCTTGCCGCCGCCCTG 79538 ||||||||||| || || ||||| Sbjct 2272571 CCCTTGCGCTTCCCCCCTCCCTG 2272549 >seq33 Length=4484617 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 60013 TCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGG 60072 |||||||||| || || || || || |||||||| || ||||||||||||||||| | Sbjct 716628 TCTTCTTCTCGGGAAGCTTTTGCGCGATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCCG 716569 Query 60073 GCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||| ||||| |||||| |||| || || |||||||| || || Sbjct 716568 GCCTGACCTTCTCTAACGAGATGATCTCGCGCGACGAGGGGCTGCA 716523 >seq475 Length=407929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 79689 CTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCA 79748 || |||||| || ||||| || || |||| ||| |||||| | | || || |||||| Sbjct 64209 CTGCTTGAGAGTGTCGTATATCCCGGCGATGCTGTCCTCCTTCGTGGTGAGCAAGAAGCA 64268 Query 79749 GCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAA 79808 |||||||| ||| || | | ||| ||||||| ||| ||||| |||| ||||| |||| Sbjct 64269 GCTCGACAGCTGCGGCTGGCACGTGCCGGCGTGGAACAGGGTGGGCGAGGCGTGGATGAA 64328 Query 79809 GAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||| | ||| || | ||||||||| Sbjct 64329 CCACTTCTCCGACATGAGGTGGTACGTCTC 64358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548516092168800