Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq23 123 3e-23 seq16 102 9e-17 seq475 91.5 2e-13 seq11 91.5 2e-13 >seq23 Length=3983565 Score = 123 bits (136), Expect = 3e-23 Identities = 166/227 (73%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 53170 TGGTG-AGACGCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACT 53228 ||||| ||| ||| ||| | | |||||||||| | |||| |||||| |||||| Sbjct 2109485 TGGTGGAGAGGCCGCAGCACATGATCATGCGCGTGTCGGTGGGCATCCACAAGGACGACA 2109426 Query 53229 ---ACACGCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCA 53285 ||| | ||| || ||||||||||| | ||| || | | ||| |||||||||| Sbjct 2109425 TCGACAAG-GTGATCG--AGACGTACGACCTCATGTCGCAGAGGCTCTTCACGCACGCCA 2109369 Query 53286 CGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGG 53345 | || |||||||||||||| || || | || ||||||||| ||||||||| | Sbjct 2109368 CCCCCACCCTGTTCAACGCCGGCACCCCCAAGCCCCAGATGTCGTCGTGCTTCCTGCTCA 2109309 Query 53346 CGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 | |||||||| ||| ||| ||||||||||||| ||||||||| || Sbjct 2109308 CCATGAAGGAGGACAGCATCAACGGCATCTACGACACGCTCAAGCAG 2109262 Score = 114 bits (126), Expect = 1e-20 Identities = 122/160 (76%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 55777 TGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCAT 55836 ||||| | | || || || || ||||||||| ||| |||||||| ||||| | ||| Sbjct 2103041 TGACAGGCG-GCGGACCGAGGGGCGTACATCTGCCAATCCCAGTCCATGAACGTGCACAT 2102983 Query 55837 GGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACT 55896 || | | | || | | |||||| ||| |||||||| |||| |||||||||||| || Sbjct 2102982 GGCGGAGGCATCCTTCGGGAAGTTGTCCTCCATGCACTTCTACGCGTGGAAGAAGGGCCT 2102923 Query 55897 CAAGACGGGTATGTACTATCTGCGGACCCGCGCCAAGGCC 55936 |||||| || |||||||| || || |||||| |||||||| Sbjct 2102922 CAAGACCGGCATGTACTACCTCCGCACCCGCCCCAAGGCC 2102883 Score = 89.7 bits (98), Expect = 6e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 |||| || || ||||||||||| ||| ||||| | ||||| ||||||||||||||||||| Sbjct 2108192 AGGGCGGAGGCAAGCGCAAGGGCTCGATCGCCGTGTACCTGGAGCCGTGGCACGCCGACA 2108133 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACC 53663 | ||| ||| | || ||| ||| || || |||| |||| | |||| Sbjct 2108132 TCGTGGCGTTCTTGGACCTGAAGAAGAACCACGGCAACGAGCTCGAGCGCGCGAGGGACC 2108073 Query 53664 TGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCA 53700 | || ||| || ||||||| || |||||||||||||| Sbjct 2108072 TTTTCTAC-GCCATGTGGATCCCCGACCTCTTCATGCA 2108036 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/90 (83%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||||| | ||||||||||| |||||||| ||||| ||||| || || || |||||| || Sbjct 2104567 GGCCTCAGGAACTCCCTGCTGGTGGCGCCGATGCCCACCGCCTCTACTGCCCAGATCCTG 2104508 Query 55538 GGCAACAACGAG-GCGTTCGAGCCGTACAC 55566 |||||||||||| ||||| ||||| | ||| Sbjct 2104507 GGCAACAACGAGAGCGTT-GAGCCCTTCAC 2104479 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 55127 GTTGTGACTCGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCG 55186 || ||||| || ||||||||||| ||||||||| || |||||||| | || | |||| Sbjct 2105944 GTCGTGACCCGCAACCTGAACCGCGTCATCGACGCCAACTACTACCCCATCGAGGAGGCG 2105885 Query 55187 CGCAAGTCCAACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGG 55232 || || |||||| | || ||| ||||||| | |||||| || |||| Sbjct 2105884 CGGAACTCCAACATGCGCCACAGGCCCATTGGCATCGGGGTGCAGG 2105839 >seq16 Length=8064047 Score = 102 bits (112), Expect = 9e-17 Identities = 232/347 (67%), Gaps = 9/347 (3%) Strand=Plus/Plus Query 53276 ACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG---AATCACCCTCAGATGTCGAGC 53332 || || ||||| || || || |||||||| ||||| || ||| | || ||| Sbjct 4536150 ACACATGCCACCCCGACGCTCTTCAACGCCGGTACCGTCAACAACCAGCTGAGCTCG--- 4536206 Query 53333 TGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAG 53392 ||||| || |||| ||| | || || || | || || || ||||| |||||||| || Sbjct 4536207 TGCTTTCTCCTGGCCATGCAAGACGATTCCGTGGATGGTATTTACGACACGCTCAAACAG 4536266 Query 53393 TGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGCG 53452 || | ||||| || | |||| || |||||| || | ||| ||| | || || Sbjct 4536267 ACGGCGAAGATCTCTAAATTCGCGGGAGGGATCGGTCTCTCCGTCTCCAACATACGAGCC 4536326 Query 53453 AACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGC 53512 || || | ||||| || || || || ||| || || || ||||| | || || Sbjct 4536327 AAGGGTTCGTACATCAAAGGCACAAATGGGGTCAGTGACGGCATAGTGCCCCTCCTGCGA 4536386 Query 53513 GTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTC 53572 |||| | ||| ||| ||| | |||| |||| || | || |||||||||||| Sbjct 4536387 TGCTTCGAGTCCACCGCCAGGTTCATCAATCAGGCCGGGCGC---CGAAAGGGGTCGTTC 4536443 Query 53573 GCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGA 53619 ||||| || | || ||||||||||||||| ||||||| || || Sbjct 4536444 GCCATGTATTTGGAAATGTGGCACGCCGACATACTGGAGTTCCTGGA 4536490 >seq475 Length=407929 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||||||||| || | ||| | |||| || | |||||| |||| ||||||||| || Sbjct 64358 GAGACGTACCACCTCATGTCGGAGAAGTGGTTCATCCACGCCTCGCCCACCCTGTTCCAC 64299 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || ||| || || ||| |||||||||||||| || | | | |||||| ||| Sbjct 64298 GCCGGCACGTGCCAGCCGCAGCTGTCGAGCTGCTTCTTGCTCACCACGAAGGAGGACAGC 64239 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAG 53392 |||| ||| || ||||| || |||||| || Sbjct 64238 ATCGCCGGGATATACGACACTCTCAAGCAG 64209 >seq11 Length=5521395 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 53243 GAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAAC 53302 ||| |||||||| ||||| || | ||| || |||||| | || || ||||||||| Sbjct 2270853 GAGTCGTACGACCTAATGTCGCAGCGGCTCTTCACCCACGCCTCCCCGACGCTGTTCAAC 2270912 Query 53303 GCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCG 53362 || || || || ||| ||| |||| |||||||||||| | | || || ||| Sbjct 2270913 GCCGGGACCCCTCGCCCGCAGCTGTCCAGCTGCTTCCTGCTCAACGTCAAAGAGGACAGC 2270972 Query 53363 ATCGACGGCATCTACGAGACGCTCAAGGAGTGTGC 53397 ||||| ||||||||||| ||||||||| || |||| Sbjct 2270973 ATCGAGGGCATCTACGACACGCTCAAGCAG-GTGC 2271006 Score = 82.4 bits (90), Expect = 8e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 53543 CAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGAC 53602 ||||| || |||||||||||||| || |||||||| |||| |||||||||||||||||| Sbjct 2272549 CAGGGAGGGGGGAAGCGCAAGGGTTCTTTCGCCATGTACCGGGAGCCGTGGCACGCCGAC 2272608 Query 53603 ATT 53605 ||| Sbjct 2272609 ATT 2272611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547207312946000