Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8 98.7 6e-16 seq665 93.3 3e-14 >seq8 Length=4529048 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 418913 GCCGCCACGAAGACGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 418854 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 418853 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 418794 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 418793 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 418734 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || ||||| || | || || || || ||||||||| Sbjct 418733 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 418685 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 419141 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 419082 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 419081 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 419022 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 419021 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 418962 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || ||||| || | || || || || ||||||||| Sbjct 418961 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 418913 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 420716 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 420657 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 420656 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420597 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 420596 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420537 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || ||||| || | || || || || ||||||||| Sbjct 420536 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 420488 Score = 98.7 bits (108), Expect = 6e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 420944 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 420885 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 420884 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420825 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 420824 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420765 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || ||||| || | || || || || ||||||||| Sbjct 420764 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 420716 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || || Sbjct 420488 GCCGCCACGGAGGCGGAGCACCAGGTGCAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 420429 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | ||||| |||||||| || Sbjct 420428 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 420369 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 420368 GATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCAC 420309 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || ||||| || | || || || || ||||||||| Sbjct 420308 GTCCAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCATG 420260 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | |||||| | ||||| || || || |||||| || ||||| || || || Sbjct 419370 GCCGCCACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGA 419311 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAAC-GCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | | |||| |||||||| | Sbjct 419310 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCCGCTGCTGGTCCGGGG 419251 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCA 34657 | | ||||||||||| |||||| || || | || ||||| ||||| Sbjct 419250 GGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCA 419191 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | || || || || ||||||||| Sbjct 419190 CGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 419141 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | ||||| || || || |||||| || ||||| || || || Sbjct 421171 CCGCCACGGAGGCGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 421112 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || |||||||| || | ||||| |||||||| || Sbjct 421111 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 421052 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 421051 ATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACG 420992 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| ||| || || || || || | || || || || ||||||||| Sbjct 420991 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 420944 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| || ||||| || || || || || || |||| || || || || ||||| || | Sbjct 419560 CCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 419501 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | |||||||| |||||||| || | ||||||||||| |||||| || || | Sbjct 419500 TCAAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 419441 Query 34637 AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 || ||||| |||||| |||| ||| || || || || || | || || || | Sbjct 419440 CGATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 419381 Query 34697 AAATCTGCATG 34707 | ||||||||| Sbjct 419380 AGATCTGCATG 419370 >seq665 Length=197211 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| ||||| || |||||| || ||||| || || || Sbjct 106091 GCCGCCACGCAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 106032 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 106031 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 105972 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 105971 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCAC 105912 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | || || || || ||||||||| Sbjct 105911 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 105863 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || || Sbjct 107118 GCCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 107059 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 107058 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 106999 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 106998 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCAC 106939 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | || || || || ||||||||| Sbjct 106938 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 106890 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || || Sbjct 107346 GCCGCCACGCAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 107287 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||| || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 107286 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 107227 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 107226 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCAC 107167 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | || || || || ||||||||| Sbjct 107166 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 107118 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34517 CCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATA 34576 |||| || ||||| || || ||||| || || |||| || || || || ||||| || | Sbjct 105323 CCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 105264 Query 34577 TTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA 34636 | | |||||| |||||||| || | ||||||||||| |||||| || || | Sbjct 105263 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 105204 Query 34637 AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAA 34696 || ||||| |||||| || | || ||||| ||||| || | || || || | Sbjct 105203 CGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTACCCGTGAGGGTCTTGACGA 105144 Query 34697 AAATCTGCATG 34707 | ||||||||| Sbjct 105143 AGATCTGCATG 105133 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||||| || || || |||||| || ||||| || || || Sbjct 106890 GCCGCCACGCAGGCGGAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 106831 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| || || | |||||| |||||||| || Sbjct 106830 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGG 106771 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || | || ||||| |||||| Sbjct 106770 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCAC 106711 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| || || || | || || || || ||||||||| Sbjct 106710 GTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 106662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314724728575910