Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq665 138 1e-27 >seq665 Length=197211 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || ||||| || ||||| || Sbjct 105860 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCC 105919 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || || || || || || || ||||| || ||||| || || || Sbjct 105920 ATCCGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 105979 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || |||| ||| | ||| |||| || || Sbjct 105980 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTA 106039 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || |||| | || |||| || ||||| Sbjct 106040 CAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTGCGTGGCGGCAT 106093 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || ||||| || ||||| || Sbjct 106887 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCC 106946 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || || || || || || || ||||| || ||||| || || || Sbjct 106947 ATCCGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 107006 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || |||| ||| | ||| |||| || || Sbjct 107007 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTA 107066 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || |||| | || |||| || ||||| Sbjct 107067 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGTGGCGGCAT 107120 Score = 138 bits (152), Expect = 1e-27 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || ||||| || ||||| || Sbjct 107115 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCC 107174 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || || || || || || || ||||| || ||||| || || || Sbjct 107175 TTCCGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 107234 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || |||| ||| | ||| |||| || || Sbjct 107235 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCGGACTA 107294 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || |||| | || |||| || ||||| Sbjct 107295 CAACATCCAGAAGGAGTCGACCCTGCACCTGGTGCTCCGCCTGCGTGGCGGCAT 107348 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || ||||| || ||||| || Sbjct 106659 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCC 106718 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || || || || || || || ||||| || ||||| || || || Sbjct 106719 TTCCGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 106778 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || |||| ||| | ||| | || || || Sbjct 106779 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTA 106838 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || |||||||||||| | || |||| | || |||| || ||||| Sbjct 106839 CAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTCCGCCTGCGTGGCGGCAT 106892 Score = 131 bits (144), Expect = 1e-25 Identities = 168/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || ||||| || ||||| || Sbjct 107343 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCC 107402 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||||| |||| || || || || || || || ||||| || ||||| || || || Sbjct 107403 ATCCGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 107462 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || |||||| | || | ||||||||| || |||| ||| | ||| | || || || Sbjct 107463 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTA 107522 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||| || |||||||||||| | || | || | || |||| |||||| Sbjct 107523 CAACATCCAGAAGGAGTCGACCCTGCACCTTGTCCTCCGCCTGCGCGGTGGC 107574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911495670400