Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 >seq1 Length=3745584 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATG 34579 ||||| || ||| | || ||||| | | ||||||||||| ||| ||| |||| Sbjct 1937926 AACCCCGAGGACCGGAGAATCGTTCTCTCGGCGTGGAACCCCGCGGACCTCGGCAAGATG 1937985 Query 34580 GCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGC 34639 || || || |||||||||| ||||||| |||||||| || | ||||||||||||||| Sbjct 1937986 GCCCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTGGCCGAGGGGGAGCTGTCCTGC 1938045 Query 34640 CAGCTCTATCAACG-ATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTA 34698 ||| | || || || | || | |||||||| | || || ||||||||||| || || Sbjct 1938046 CAGATGTACCAGCGCAGCGCG-GACATGGGCCTCGGCGTTCCGTTCAACATCGCCTCCTA 1938104 Query 34699 CGCTCTGCTCACG 34711 ||| ||||||||| Sbjct 1938105 CGCGCTGCTCACG 1938117 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 6634 CGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGAT-C 6692 ||||||||| ||||| || ||||||||||| || || | |||||||| | || | | Sbjct 1938117 CGTGAGCAGCGCGTAGGAGGCGATGTTGAACGGAACGCCGAGGCCCATGTC-CGCGCTGC 1938059 Query 6693 GTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGC 6752 | || || | |||||||||||||||||| | || |||||||| ||||||| |||||| Sbjct 1938058 GCTGGTACATCTGGCAGGACAGCTCCCCCTCGGCCACGTAGAACTGGCAGAACATGTGGC 1937999 Query 6753 ACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTC 6812 |||| || || |||||| ||| ||| ||||||||||| | | ||||| || | Sbjct 1937998 ACGGCGGCAGGGCCATCTTGCCGAGGTCCGCGGGGTTCCACGCCGAGAGAACGATTCTCC 1937939 Query 6813 TGTCATCAGGGTT 6825 ||| || ||||| Sbjct 1937938 GGTCCTCGGGGTT 1937926 Score = 109 bits (120), Expect = 5e-19 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 34144 CCGGAAGGGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATA 34203 ||| | ||||||||| || ||||||||||| || ||| ||||||| ||| || | Sbjct 1936109 CCGCAGGGGGGACCGCACGGGGACGGGGACGCTGTCCAAGTTCGGCGTGCAGATGCGCTT 1936168 Query 34204 CAACCTTCGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGT 34260 || ||| ||| || || ||||||||||| || || || |||| |||| ||||| Sbjct 1936169 CAGCCTCAGGGAAGAGCGGTTCCCGCTGCTGACCACCAAGCGCGTGTTCTGGCGCGGCGT 1936228 Query 34261 GGTCGAGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCG 34320 || |||||||||||||||||||| ||| || ||| | || | |||| | || Sbjct 1936229 GGCGGAGGAGCTGCTGTGGTTCGTCGCTGGGTGTACAAACGCGAACGTGCTCAAGGAACG 1936288 Query 34321 GGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGAC 34366 |||| | | |||||||||| ||||||| | || || || ||| Sbjct 1936289 GGGGATCCACATCTGGGACGGCAACGGGTCGAGGGAGTTCCTTGAC 1936334 Score = 109 bits (120), Expect = 5e-19 Identities = 160/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 6979 GTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTC 7038 ||| || || || | ||||||| |||||||||| | | |||||| | |||| | Sbjct 1936334 GTCAAGGAACTCCCTCGACCCGTTGCCGTCCCAGATGTGGATCCCCCGTTCCTTGAGCAC 1936275 Query 7039 CTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTA 7098 || | ||| || ||| |||||||||||||||||||| ||||||| |||| | Sbjct 1936274 GTTCGCGTTTGTACACCCAGCGACGAACCACAGCAGCTCCTCCGCCACGCCGCGCCAGAA 1936215 Query 7099 CACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGTATCGGGCCTGTGT 7155 ||| || || || ||||||||||| || || ||| ||| || | || ||| Sbjct 1936214 CACGCGCTTGGTGGTCAGCAGCGGGAACCGCTCTTCCCTGAGGCTGAAGCGCATCTGCAC 1936155 Query 7156 GCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCCCTTCCGG 7201 ||||||| ||| || ||||||||||| || ||||||||| | ||| Sbjct 1936154 GCCGAACTTGGACAGCGTCCCCGTCCCCGTGCGGTCCCCCCTGCGG 1936109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255283834400