Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq665 102 6e-17 seq8 95.1 8e-15 >seq665 Length=197211 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 105864 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 105923 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 105924 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 105983 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 |||||| | || || |||||||| || ||||| |||| |||| |||| | || |||| Sbjct 105984 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCG--GACTACA 106041 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 106042 ACATCCAGAAGGAGTCGAC 106060 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 106891 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 106950 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 106951 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107010 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 |||||| | || || |||||||| || ||||| |||| |||| |||| | || |||| Sbjct 107011 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCG--GACTACA 107068 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 107069 ACATCCAGAAGGAGTCGAC 107087 Score = 102 bits (112), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 107119 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 107178 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 107179 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107238 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 |||||| | || || |||||||| || ||||| |||| |||| |||| | || |||| Sbjct 107239 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCG--GACTACA 107296 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 107297 ACATCCAGAAGGAGTCGAC 107315 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 106663 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 106722 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 106723 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 106782 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 106783 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 106842 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 106843 ATCCAGAAGGAGTCGAC 106859 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 107347 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCATCC 107406 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 107407 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 107466 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 107467 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 107526 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 107527 ATCCAGAAGGAGTCGAC 107543 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 105134 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACGATCACTCTCGACGTGGAGCCTTCC 105193 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 105194 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 105253 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 |||||| | || || |||||||| || ||||| |||| |||| |||| | || |||| Sbjct 105254 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTTTCG--GACTACA 105311 Query 23789 ACATACAAAA 23798 |||| || || Sbjct 105312 ACATCCAGAA 105321 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||||||||| || || | | Sbjct 106092 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTCGACGTGGAGCCTTCC 106151 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || || | || || || || Sbjct 106152 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 106211 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 106212 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 106271 Query 23791 ATACAAAA 23798 || || || Sbjct 106272 ATCCAGAA 106279 >seq8 Length=4529048 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 420945 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCGTCG 421004 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 421005 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 421064 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || ||||| |||| ||||| | || |||||| Sbjct 421065 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 421124 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 421125 ATCCAGAAGGAGTCTAC 421141 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 419371 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCG 419430 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 419431 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419490 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||||| || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 419491 CAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 419550 Query 23791 ATACAAAA 23798 || || || Sbjct 419551 ATCCAGAA 419558 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 418686 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418745 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 418746 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 418805 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 418806 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 418865 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 418866 ATCCAGAAGGAGTCTAC 418882 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 418914 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 418973 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 418974 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419033 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 419034 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 419093 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 419094 ATCCAGAAGGAGTCTAC 419110 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 420261 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420320 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 420321 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420380 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 420381 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420440 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 420441 ATCCAGAAGGAGTCTAC 420457 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 420489 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420548 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 420549 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420608 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 420609 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420668 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 420669 ATCCAGAAGGAGTCTAC 420685 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 420717 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACCATCACCCTGGACGTGGAGCCGTCG 420776 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 420777 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 420836 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || |||||||| || ||||| |||| ||||| | || |||||| Sbjct 420837 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAAC 420896 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 420897 ATCCAGAAGGAGTCTAC 420913 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| || || || || | || Sbjct 419142 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCTTCG 419201 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | || || || || ||||| || ||| | || || || || Sbjct 419202 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 419261 Query 23731 CAGC-GTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | || || |||||||| || ||||| |||| ||||| | || ||||| Sbjct 419262 CAGCGGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCGGACTACAA 419321 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 419322 CATCCAGAAGGAGTCTAC 419339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004368245160