Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ectocarpus_20siliculosus_20[genbank_20GCA_5F000310025.1_202010-06- 24] 1,270 sequences; 195,810,619 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq875 196 1e-44 seq665 149 1e-30 seq8 138 3e-27 >seq875 Length=31036 Score = 196 bits (216), Expect = 1e-44 Identities = 215/286 (75%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 7445 TATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAA 7504 ||||| |||| |||||||| |||||||| || ||||||| | ||| | |||| | Sbjct 13220 TATATCTAATCTTTGGTGGTTTTTCTGGGGTTTTAGGTACAGCGATGTCTGTTCTTATTA 13161 Query 7505 GGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACG 7564 || | || | ||| ||||||| ||| | || | |||||| ||| | ||||| | Sbjct 13160 GGCTTCAACTCGCTAGTCCGGGTAATCAGTTTTTAGGAGGTAATCACCAGTTATACAATG 13101 Query 7565 TTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAG 7624 ||||| | || || || || ||| | |||||||| ||| | |||||||| ||| | || | Sbjct 13100 TTATTGTAACAGCCCACGCTTTTTTAATGATTTTTTTTATGGTTATGCCAGTTCTTATTG 13041 Query 7625 GCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAA 7684 | ||||| || ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 13040 GAGGTTTTGGTAATTGGTTTGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCTC 12981 Query 7685 GGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 | | || ||||| || ||||| || || || ||||| ||| |||| Sbjct 12980 GTATGAATAATATTAGCTTTTGGTTGCTTCCTCCTTCTTTAATTCT 12935 Score = 113 bits (124), Expect = 1e-19 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| |||||||||||||| || ||||||||||| || | | ||||| ||||| |||| Sbjct 12541 TTCCGGATGACCAAAAAACCAAAATAAATGTTGGTATAACACTGGATCTCCTCCACCTGC 12600 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 ||||||||||| ||||||||||||||||||||||||| |||| Sbjct 12601 AGGATCAAAAAAAGTAGTATTAAAATTTCTATCAGTTAATAACA 12644 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 372630 ACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGTAAAACG 372689 ||| ||| | |||||||||||||||| |||||||||||| ||| ||||| | | || | | Sbjct 30233 ACAAAATCGGGGGTAGCGACTGTTTATTAAAAACACAGGTCTCTGCTAACTCGCAAGAGG 30174 Query 372690 ATGTATAGGGTCTGACAC 372707 |||||||||| ||||||| Sbjct 30173 ATGTATAGGGACTGACAC 30156 >seq665 Length=197211 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || || || || |||| ||||| || | || || | || || Sbjct 107558 AGGACAAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCC 107499 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 107498 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 107439 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||||||| Sbjct 107438 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTC 107379 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 107378 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 107347 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| || | | || | || || Sbjct 106075 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 106016 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 106015 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 105956 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||||||| Sbjct 105955 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTC 105896 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 105895 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 105864 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | || || | || || Sbjct 106874 AGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCC 106815 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 106814 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 106755 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||||||| Sbjct 106754 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTC 106695 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 106694 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106663 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | | || | || || Sbjct 107102 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 107043 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 107042 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 106983 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||||||| Sbjct 106982 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGATGGCTCCACGTCGAGAGTGATCGTC 106923 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 106922 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 106891 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | | || | || || Sbjct 107330 AGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 107271 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 107270 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 107211 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||||||| Sbjct 107210 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTC 107151 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 107150 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 107119 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 106279 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 106220 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || || || || |||||||| |||||||| |||||||| | ||| Sbjct 106219 AGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 106160 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | |||||||| | ||||||||||||||||| | || || | ||| Sbjct 106159 ATCGTGTCGGAAGGCTCCACGTCGAGAGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAG 106100 Query 225706 ACTTGCAT 225713 | ||||| Sbjct 106099 ATCTGCAT 106092 Score = 118 bits (130), Expect = 3e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || || || |||||||| || |||||||| || || || ||||| || || || || ||| Sbjct 105291 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCC 105232 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 ||||| |||||||| |||||||| | ||||| ||||| || | |||||||| | ||| Sbjct 105231 TTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCGGAAGGCTCCACGTCGAGAGTG 105172 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| ||||| | || || | ||| | ||||| Sbjct 105171 ATCGTCTTACCCGTGAGGGTCTTGACGAAGATCTGCAT 105134 >seq8 Length=4529048 Score = 138 bits (152), Expect = 3e-27 Identities = 165/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || |||| ||||| || | || || Sbjct 419364 ACGAAGACGAAGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGT 419305 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTC-GTTGTTGGTCGGGCGGAATAC 225610 | || || || |||||||| || |||||||| || | | || ||||| || || |||| Sbjct 419304 GCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCCGCTGCTGGTCCGGGGGGATAC 419245 Query 225611 CTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 | |||||||| |||||||| |||||||| | ||||| ||||| || | |||||||| | Sbjct 419244 CCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAAGGCTCCACGTCCA 419185 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||||||| | || || | ||| | ||||| Sbjct 419184 GGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 419142 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || || || |||| ||||| || | || || | || || Sbjct 421156 AGCACCAGGTGCAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCC 421097 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || ||||| |||||||| Sbjct 421096 TCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC 421037 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| | ||||| ||||| || | |||||||| | ||||| ||| Sbjct 421036 TGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTC 420977 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||| | || || | ||| | ||||| Sbjct 420976 TTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 420945 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 419558 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 419499 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| || || ||||| |||||||| |||||||| |||||||| | ||| Sbjct 419498 AAACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCG 419439 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAAC 225705 || ||||| || | |||||||| | ||||| ||||||||||| | || || | ||| Sbjct 419438 ATCGTGTCCGAAGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAG 419379 Query 225706 ACTTGCAT 225713 | ||||| Sbjct 419378 ATCTGCAT 419371 Score = 116 bits (128), Expect = 9e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| || | || || | || || || |||||||| || |||||||| Sbjct 418061 TTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATC 418002 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| || ||||| || || || || || ||||| |||||||| |||||||| | ||| Sbjct 418001 AATCGCTGCTGGTCCGGGGGGATGCCCTCTTTGTCCTGGATCTTCTGCTTCACGCCGTCG 417942 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 || ||||| || | |||||||| | ||||| ||||||||||| Sbjct 417941 ATCGTGTCCGACGGCTCCACGTCCAGGGTGATGGTCTTGCCCGT 417898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192511795281380