Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq65 138 2e-27 seq134 134 3e-26 seq231 84.2 5e-11 seq41 84.2 5e-11 >seq65 Length=514140 Score = 138 bits (152), Expect = 2e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 281793 CCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCC 281852 || || |||||| | ||| |||| |||| || || ||| |||||| ||||||||||| Sbjct 196112 CCGAATTGACCCGCTGGCGTCAACAAGTTGATATTGTTGGACCCGACAAAATCCTGAGCC 196053 Query 281853 AGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCA 281912 | ||| ||||| || ||||| | ||| | |||||||||||||| ||| || |||||| Sbjct 196052 ATGTTCACGATCGTTCCCTGTAAAGATGCTTCACCGTGGTGATACGCGGAATGCTCGGCA 195993 Query 281913 ACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAAGCGCAA 281972 | |||||| | | ||| || || || || || | ||| || || |||||| | Sbjct 195992 ATGTAACCAGTCAGCTGAGCCACTTTGACTTCACCTTTCAGCTTACGCTTGAAACATGCA 195933 Query 281973 TATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATG 282023 || || || || ||||| ||||||||||| || || |||| | | |||||| Sbjct 195932 TACAAGACCTTGCGTTGCGAAGGCTTGAATCCGTCCACGAGACAAGGAATG 195882 >seq134 Length=485476 Score = 134 bits (148), Expect = 3e-26 Identities = 333/498 (67%), Gaps = 12/498 (2%) Strand=Plus/Minus Query 281540 GTTGTCTACGATGTCTTTGGGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAAT 281599 |||||| | ||| || |||||| || | | || || || ||||| || |||||||| Sbjct 51905 GTTGTCGATGATATCACGGGGATTGTAGTTCGCAACATTCGTGGACCAGCCAGTTCCAAT 51846 Query 281600 ACCACTTGAACCATTTACCAAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAAT 281659 |||| | ||| || || | || | || || | ||| || ||| | ||||||||||| Sbjct 51845 ACCATCCGCACCGTTCACTAGAACCATGGGAATGACAGGAACGTAAAAGTCTGGTTCAAT 51786 Query 281660 TTTATCACCATCATCATACAAA---TACTTCAGAAGGTTATCATCTGTATCGACGAAAAC 281716 | ||||| || |||| || || || | | ||| || || || | ||| Sbjct 51785 GGTCATGCCATCGTC---CAAACGGTAGTTGAGCAACTCATCGTC-GTCGGGATGGAAAA 51730 Query 281717 CTGT-CGCGTCTTAGGGTTCAGTTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTAC 281775 || || || | || | ||| |||||| || || | | ||| || || | Sbjct 51729 TGGTGCGTGTAATCGGCTCAAGTCGCGTGAAAATGTAACGAGGCGAAGCGGCATCCTTGC 51670 Query 281776 CACCCTGCAGCCTCGACCCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATTGCTCC 281835 | ||| || | || ||||| ||||| | || |||| | ||||| || ||| || Sbjct 51669 CGCCCATCAAACGCGTACCAAATTGACCGGCTGGTGTCAACAAATTAATATTGTTGGACC 51610 Query 281836 CGACGTAATCCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGAT 281895 | || | || ||||||| ||| || || || ||||| | ||| | ||||||||||||| Sbjct 51609 CAACAAAGTCTTGAGCCATGTTCACAATCGTTCCCTGTAAAGATGCTTCACCGTGGTGAT 51550 Query 281896 AGGCGCTGTGTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGT 281955 | ||| || ||||||| |||||| | | ||| || || || || || | ||| | Sbjct 51549 ACGCGGAATGCTCGGCAATGTAACCAGTCAGCTGGGCCACTTTGACTTCACCTTTCAGCT 51490 Query 281956 TGCGTTTGAAAGC--GCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGAC 282013 |||| ||||| || ||| || || || |||||||| ||||||||||| || || |||| Sbjct 51489 TGCGCTTGAA-GCATGCA-TACAAGACCTTTCGTTGCGAAGGCTTGAATCCGTCCACGAG 51432 Query 282014 AGACGGAATGCTGCGTTC 282031 | | |||||| ||||| Sbjct 51431 ACAAGGAATGGAACGTTC 51414 >seq231 Length=47950 Score = 84.2 bits (92), Expect = 5e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| || ||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 42636 GCCTGTGTAGCTCAGTAGGTAGAGCGCCCGGCTTTTAACCGTGTGGTCGTGGGTTCGAGC 42695 Query 165770 CCCACGATGGG 165780 ||||| || || Sbjct 42696 CCCACCATAGG 42706 >seq41 Length=265118 Score = 84.2 bits (92), Expect = 5e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||| || ||||||||| ||||||||||| | ||||||| | |||||||||||||||||| Sbjct 109941 GCCTGTGTAGCTCAGTAGGTAGAGCGCCCGGCTTTTAACCGTGTGGTCGTGGGTTCGAGC 110000 Query 165770 CCCACGATGGG 165780 ||||| || || Sbjct 110001 CCCACCATAGG 110011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057820001755850