Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq98 129 6e-25 seq31 87.8 2e-12 seq226 86.0 6e-12 >seq98 Length=427084 Score = 129 bits (142), Expect = 6e-25 Identities = 294/439 (67%), Gaps = 10/439 (2%) Strand=Plus/Plus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 ||||| || ||||| ||||| | || ||||| | || || | |||||| ||||| Sbjct 135034 AGACAGGCAAAATCACAATGCAGACCTTCGTCGCGACTAATCAATTCGTTGGAAAAGCAA 135093 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || |||||||| | |||||| || || || || || |||||| Sbjct 135094 AGACCGGGCATGAGACCCCGTTTCTTGAGCCAAAAAATGGCACAAAAGGAACCGGAAAAG 135153 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT---G 17137 || || || ||||||| ||||| |||| | ||||| || | | |||| || | Sbjct 135154 AAAATGCCTTCGACGGCCGCAAAGGCGACACAGCGTTCCGCAAAGGAAGCGTTGTTCGCG 135213 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | || ||||| | |||| | ||| || | | || || | ||| || ||| Sbjct 135214 TCACA---CCATTGCAAGGCCCAATGGGCCTTCTTTTGTACACACGGAACCGTATCAATG 135270 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 ||| || || | || || || | | ||| || |||||||| || | || Sbjct 135271 GCCCGCAACAAATGATCCTTCTCTTTCGGATCGCGAATGTACGTATCAATCAAAAGAGAA 135330 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || ||||| ||| ||||| || | ||| || || ||||||||||| || ||||||||| Sbjct 135331 TAGGTTTCGCTGTGAATGTTTTCGACGGCAATTTGGAATCCGTAAAAACAACGGGCTTCC 135390 Query 17318 GCTATTTGAACTTCCACGTAGAATCG--TTCCGCTAGATTTTCGTTCACGATGCCGTCGC 17375 | ||||| ||| ||| || | || || | |||||| ||||| ||||||||| Sbjct 135391 GGCGATTGAATTTC--GGTACAAAAGTTTTGTGCCAAATTTTCATTCACAATGCCGTCGG 135448 Query 17376 TCGCGGCGAAAAACGCCAA 17394 |||||| || |||||||| Sbjct 135449 ACGCGGCAAAGAACGCCAA 135467 >seq31 Length=904706 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 119860 TCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACA 119919 ||| || ||||||| ||||| |||| || | | ||||| | || || ||||| || Sbjct 56584 TCCAACAAATCCGTTAGGATCTTTTCCGTCAAGCGCGTATCTGTCATTGAAGTATTGACT 56525 Query 119920 GACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTAC 119977 || || || || |||| || | |||| ||||||| || || ||||| ||||| ||| Sbjct 56524 --CGTTTTCAAAGCGATTTCTGGTGACTCGGTCCATTCAAGAATCTTTTTCGCCCAATAC 56467 Query 119978 ATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCAT 120037 || | | | | |||||||| |||||| | || | || || || |||||||||||| Sbjct 56466 ATTCTCATGAAACCATGCATGCCACCTTCTCTCACTAACTGGAGCTGCGCGGCGTTCCAT 56407 Query 120038 AAGGGATCGTGTGT 120051 || |||||||| Sbjct 56406 AATTCGTCGTGTGT 56393 >seq226 Length=603765 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 119860 TCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACA 119919 ||| ||| ||||||| ||||| |||| || | | | ||| | || || ||||| || Sbjct 209189 TCCAACGAATCCGTTAGGATCTTTTCCGTCAAGCGCATATCTGTCATTGAAGTATTGACT 209248 Query 119920 GACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACAT 119979 |||| ||| |||| || | ||| ||||||| || || ||||| ||||||||||| Sbjct 209249 CGTTTTTAAAGCAATTTCCGGTGACTCAGTCCATTCAAGAATCTTTTTCGCCCAGTACAT 209308 Query 119980 ACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATAA 120039 | | | | |||||||| |||||| | |||| || || || || || ||||| | Sbjct 209309 TCTCATGAAACCATGCATGCCACCTTCTCTCACCAACTGGAGCTGCGCCGCATTCCAAAG 209368 Query 120040 GGGATCGTGTGT 120051 ||||||||| Sbjct 209369 TTCATCGTGTGT 209380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543691550600