Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq61 107 2e-18 seq128 98.7 8e-16 >seq61 Length=553271 Score = 107 bits (118), Expect = 2e-18 Identities = 270/403 (67%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 18614 ATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTATG 18673 ||| |||||| | || || || || || ||||| | ||| | ||||| ||||| || Sbjct 18403 ATTGCCTCTTCTCACCACCAAACGAACCTTCTGGAGAGGCGTGGCCGAAGAATTGTTGTG 18462 Query 18674 GTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGGA 18733 |||||| | || || | |||| || |||||||| || | || ||||| ||||| Sbjct 18463 GTTTATTCAGGGAAATACGAACGCCAATGATCTCGCCGCCAAGAAGATTCACATTTGGGA 18522 Query 18734 TATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGGA 18793 | | || ||| | | || || || | || || | | |||| ||||| Sbjct 18523 TGGCAATGGTTCGCGGGAGTTCCTCGATCAGTTGGGATTGAAACATCGACAAGTTGGGGA 18582 Query 18794 CCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCA 18853 ||| || ||| | ||||| ||||||||| | || |||||||| || || |||| | | Sbjct 18583 CCTCGGACCCGTGTACGGTTTCCAGTGGCGTCACTTTGGAGCCGAGTACCAAGA-TATGC 18641 Query 18854 ATCAAACTATTT-ACAG--CAAGGAATCGATCAGCTG-CAAACTGTTATAGATACAATTA 18909 || | | ||| || | || || |||||||||||| | |||| || |||| ||||| Sbjct 18642 AT--ACCGATTACACCGGACAGGGCATCGATCAGCTGGCGGACTGC-ATCGATAAAATTA 18698 Query 18910 AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCT 18969 | | | || ||| |||||| || | | || | |||||||| ||||| | || Sbjct 18699 AGAATCATCCCGAAGACCGACGCATTGTGTTGACGGCCTGGAATCCCAAGGACTTGCCGA 18758 Query 18970 TAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT 19012 | |||| | ||||| ||||| | ||| ||||||||||| || Sbjct 18759 TTATGGCGTTGCCTCCGTGTCATATGTTTTGTCAGTTTTATGT 18801 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 19055 GGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGT 19114 ||| ||||| ||||| || |||||||||||||| | || || || | || |||| | Sbjct 18911 GGACATGGGGCTTGGAGTTCCGTTCAACATTGCGAGCTACGCTCTCTTGACGCACATGAT 18970 Query 19115 AGCGCATGTTACAGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATAT 19174 || || ||||| |||| ||| | ||||| || |||| || || ||||| ||||| Sbjct 18971 CGCTCACGTTACGGGACGAAAACCGGGAGAGTTTGTTCACGTCATTGGCGATGCGCATAT 19030 Query 19175 TTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT--AGCTCGATCC 19220 || ||||||||| | |||||||| |||| ||| || ||| ||| || Sbjct 19031 CTATTTGAATCATGTGGATGCTTTGAAAGAGCAACTCGAGCGCGAGCC 19078 >seq128 Length=686783 Score = 98.7 bits (108), Expect = 8e-16 Identities = 249/374 (67%), Gaps = 6/374 (2%) Strand=Plus/Minus Query 18642 TTTTGGAGGGCCGTCGTGGAAGAGTTGTTATGGTTTATCCGCGGGTCAACCGATTCCAAA 18701 || ||||| | ||||| ||||| ||||| ||||| || | || || | | || Sbjct 552440 TTCTGGAGAGGCGTCGCCGAAGAATTGTTGTGGTTCATTCAGGGCAATACGAACGCGAAT 552381 Query 18702 GAACTCGCCGCTAAAGATATACACATATGGGATATATACGGATCGAGCAAATTTCTAAAT 18761 || |||||||| || |||| ||||| |||||| | || ||| || | ||||| || Sbjct 552380 GATCTCGCCGCCAAGAATATTCACATCTGGGATGGCAATGGTTCGCGCGAGTTTCTCGAT 552321 Query 18762 AGGAATGGCTTCCATAAAAGACACACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGG 18821 | || || | |||| ||||||||||| ||| | ||||||||||||||| Sbjct 552320 CAGTTGGGATTGACGCATCGACAAGTCGGGGACCTTGGACCCGTGTACGGCTTCCAGTGG 552261 Query 18822 AGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAG--CAAGGAATCG 18879 | || |||||||| || || ||||| || | | || || | || || |||| Sbjct 552260 CGTCACTTTGGAGCCGAGTACAAAGATATGCACGCCGATTA--CACCGGACAGGGCATCG 552203 Query 18880 ATCAGCT-GCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 | ||||| || | || || |||| |||||| | | || ||| || || || | Sbjct 552202 ACCAGCTGGCGGATTG-CATCGATAAAATTAAGAATCATCCCGAAGATCGGCGCATTGTC 552144 Query 18939 ATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTA 18998 | || | |||||||| ||||| | || | |||| | ||||| ||||| | ||| Sbjct 552143 TTGACGGCCTGGAATCCCAAGGACTTGCCGATTATGGCGTTGCCTCCGTGTCATATGTTT 552084 Query 18999 TGTCAGTTTTACGT 19012 ||||||||||| || Sbjct 552083 TGTCAGTTTTATGT 552070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399502563658275