Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq142 118 2e-21 seq41 105 1e-17 seq120 104 4e-17 seq82 100 4e-16 seq232 98.7 2e-15 seq2 98.7 2e-15 >seq142 Length=241092 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || |||||||||| || || || || || || | || |||| | Sbjct 170543 ATGCAAATTTTCGTAAAGACACTGACGGGTAAGACCATTACCCTGGACGTTGAGCCTTCG 170484 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || || || ||||| || || || || || || |||||| Sbjct 170483 GATACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAGGGAATTCCCCCGGATCAA 170424 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || || |||||||| || ||| | || || || ||||| ||| Sbjct 170423 CAACGATTGATTTTCGCCGGTAAACAATTGGAAGATGGACGTACTTTGAGTGATTACAAT 170364 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||| || ||||| |||||||| ||| | ||||||||| Sbjct 170363 ATTCAAAAAGAATCCACCTTGCACTTGGTTTTGCGTCTCCGAGGTGGT 170316 >seq41 Length=265118 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || |||||||| || || || || ||| | || |||||||| ||||| Sbjct 262868 AAGATTCAAGACAAGGAAGGTATTCCGCCGGACCAGCAACGTCTCATTTTTGCCGGAAAG 262809 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | || || || ||||| ||||||||||| ||| ||||||||| Sbjct 262808 CAGTTGGAGGATGGACGCACTTTGAGCGATTACAATATTCAAAAGGAAAGTACTTTGCAT 262749 Query 124743 TTGGTTTTACGTTTACGAGGTGG 124765 | ||||| || || || ||||| Sbjct 262748 CTCGTTTTGCGATTGCGCGGTGG 262726 >seq120 Length=609189 Score = 104 bits (114), Expect = 4e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| | || || || || || || | || | || | Sbjct 561783 AATGCAAATCTTCGTAAAGACCTTGACGGGTAAGACCATCACGCTCGATGTCGAGCCGTC 561842 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || |||| | || || || || || || || || || || || ||||| Sbjct 561843 TGACACTATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGAATTCCTCCGGATCA 561902 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || ||||| || |||||||| || || ||| |||||||| | ||||| || Sbjct 561903 ACAGCGTCTGATTTTCGCCGGAAAACAGTTGGAAGATGGTCGAACACTGTCCGATTACAA 561962 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || || |||||||| || |||||||||||| | || || || |||||| ||| || Sbjct 561963 CATCCAGAAAGAATCGACCTTGCATTTGGTTCTCCGATTGCGTGGTGGTGGTAAGAA 562019 >seq82 Length=265081 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || |||||||| || |||||||| || || || || ||| | || |||||||| ||||| Sbjct 263148 AAGATTCAAGACAAGGAAGGTATTCCTCCGGACCAGCAACGTCTCATTTTTGCCGGAAAG 263089 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || |||||| | || || || ||||| ||||||||||| ||| ||||||||| Sbjct 263088 CAGTTGGAGGATGGACGCACTTTGAGCGATTACAATATTCAAAAGGAAAGTACTTTGCAT 263029 Query 124743 TTGGTTTTACGTTTACGAGGTGG 124765 | || || || || || ||||| Sbjct 263028 CTTGTCTTGCGATTGCGCGGTGG 263006 >seq232 Length=134552 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||| ||||| || |||||||| || || || || ||| | || |||||||| || || Sbjct 133185 AAAATCCAAGACAAGGAAGGTATTCCTCCGGACCAGCAACGTCTCATTTTTGCCGGTAAG 133126 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || ||| | || || ||| ||||| ||||||||||| ||| ||||||||| Sbjct 133125 CAGTTGGAAGATGGACGCACTTTAAGCGATTACAATATTCAAAAGGAAAGCACTTTGCAT 133066 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 | ||| | || || || |||||| Sbjct 133065 CTTGTTCTGCGATTGCGCGGTGGT 133042 >seq2 Length=622807 Score = 98.7 bits (108), Expect = 2e-15 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || ||||||| | || || || || || || | || | || | Sbjct 353075 AATGCAAATCTTCGTAAAGACCTTGACGGGTAAGACCATCACGCTCGATGTCGAGCCGTC 353016 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || || |||| | || || || || || || || || || || || ||||| Sbjct 353015 TGACACTATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGAATTCCTCCGGATCA 352956 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || |||||||| || || ||| |||||||| | || || || Sbjct 352955 ACAGCGTTTGATTTTCGCCGGAAAACAGTTGGAAGATGGTCGAACACTGTCCGACTACAA 352896 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 ||||| |||||||| || |||||||||||| | || || || |||||| ||| || Sbjct 352895 CATTCAGAAAGAATCGACCTTGCATTTGGTTCTCCGATTGCGTGGTGGTGGTAAGAA 352839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755453214256000