Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq168 125 2e-23 seq10 113 1e-19 >seq168 Length=39825 Score = 125 bits (138), Expect = 2e-23 Identities = 398/614 (65%), Gaps = 5/614 (1%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||||| ||||| |||||||| || || || || ||||| ||||| Sbjct 28491 GACTTTGAGTACGATTACTTTGGATTCAAAACACTCGAAAAGAGTTACCTCCTTAAAATG 28550 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || |||| | ||||| ||| |||||||||| || |||||||| |||||| Sbjct 28551 CACGGACAGATTGCCGAACGTCCCCAGTTGTTGTTGATGCGTGTTGCTGTCGGTATTCAC 28610 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| | || | ||||| |||| || | | || | | || Sbjct 28611 GGAGATGACATCCCCAAAGTCATTGAGACCTACAACGACCTTTCGAATCGGTACTTTACG 28670 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTT 249048 || || || || ||||||||||||||||| ||| || || || |||||||| Sbjct 28671 CACGCTACGCCCACGCTCTTCAACGCCGGAACCAACATGCCCCAAATGTCATCGTGCTTC 28730 Query 249049 CTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACGGCG 249108 | || ||||| | | || || | || || ||||| || ||||| || | || Sbjct 28731 TTGCTCACCATGAAGCAGGATTCAATTGAAGGTATTTACGATACGCTCAAGAACTGCGCC 28790 Query 249109 AAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGT 249168 | || || || | ||| || || ||||||||| || | |||||| ||||| | Sbjct 28791 ATCATCTCCAAGTACGCCGGAGGTATCGGTCTCGCCATTCACAACATTCGAGCCAGCAAA 28850 Query 249169 TCGTACATCAAAGGTACAAATGGGGTCAGTG-ATGGTATCGTACCCCTCCTTCGATGCTT 249227 || ||||| ||||| || || || | | ||||| || ||| | ||||| ||| Sbjct 28851 TCCTACATTCGGGGTACCAA-CGGAACATCGAACGGTATTGTGCCCATGCTTCGCGTCTT 28909 Query 249228 TGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCAT 249284 | ||| || | | | | |||| || || || || || | ||| Sbjct 28910 CAACAACACGGCGCGTTATGTGGATCAGGGTGGTGGCAAGCGTAAAGGCAGTATTGCCTG 28969 Query 249285 GTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACAACGG 249344 |||||||| |||||| |||||| | || || ||||| || ||| ||||| |||| Sbjct 28970 CTATTTGGAGCCGTGGCATGCCGATGTCTTTGAATTCCTTGATTTGCGCAAGAATCACGG 29029 Query 249345 CAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCAT 249404 || || | | |||||||| ||||| |||| || ||||| |||| |||||||| Sbjct 29030 AAATGAAAGCGATCGTGCGCGTGATCTCTTTTACGCGCTTTGGGTGCCCGATTTGTTCAT 29089 Query 249405 GCGCCGCGTCAAGG 249418 | || ||||||| Sbjct 29090 GAAGCGAGTCAAGG 29103 >seq10 Length=152390 Score = 113 bits (124), Expect = 1e-19 Identities = 398/618 (64%), Gaps = 13/618 (2%) Strand=Plus/Plus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || |||||||||| ||||| |||||||| || || || || || ||||| || Sbjct 132878 GACTTTGAGTACGATTACTTTGGCTTCAAAACACTCGAAAAGAGTTACCTTCTCAAGATG 132937 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || |||| | ||||| ||| | |||||||| || ||||| || |||||| Sbjct 132938 CACGGACAGATTGCTGAACGTCCCCAGTTGCTATTGATGCGTGTTGCTGTTGGAATTCAC 132997 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| | || | ||||| |||| || | | || | | || Sbjct 132998 GGAGATGACATCCCCAAAGTCATTGAGACCTACAACGACCTTTCGAATCGGTACTTTACG 133057 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGC---TGAGCTCGTGC 249045 || || || || ||||||||||| ||||| || ||||| | || || |||||| Sbjct 133058 CACGCTACGCCCACGCTCTTCAATGCCGGAAC---CAACATGCCGCAAATGTCGTCGTGC 133114 Query 249046 TTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGACG 249105 || | || ||||| | | |||||| | || || || || || |||||||| | Sbjct 133115 TTCTTGCTCACCATGAAGCAGGACTCTATTGAAGGTATCTACGATACGCTTAAGAACTGC 133174 Query 249106 GCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAAG 249165 || | || || || | || || || ||||||||| || | |||||| ||||| | Sbjct 133175 GCCATCATCTCCAAGTATGCTGGAGGTATCGGTCTCGCCATTCACAACATTCGAGCCAGC 133234 Query 249166 GGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCGAT 249223 || ||||| || || || || ||| | ||||| || ||| | ||||| Sbjct 133235 AAATCCTACATTCGCGGAACCAACGGAACGTC--GAACGGTATTGTGCCCATGCTTCGCG 133292 Query 249224 GCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGGTCGTTCG 249280 || | ||| || | | | | | |||| || || || || || | | Sbjct 133293 TTTTCAACAACACGGCGCGTTACGTGGATCAGGGTGGTGGCAAGCGCAAAGGCAGTATTG 133352 Query 249281 CCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAGAACA 249340 || |||||||| |||||| |||||| | || ||||||||||| ||| || || Sbjct 133353 CCTGCTATTTGGAGCCGTGGCATGCCGATGTCTTTGAGTTCCTGGATTTGCGCAAAAATC 133412 Query 249341 ACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGACTTGT 249400 ||||||| || | | |||||||| || || |||| || ||||| |||| |||| Sbjct 133413 ACGGCAATGAAAGCGATCGTGCGCGTGATCTATTTTACGCGCTTTGGGTGCCCGATTTGT 133472 Query 249401 TCATGCGCCGCGTCAAGG 249418 ||||| || ||||||| Sbjct 133473 TCATGAAGCGAGTCAAGG 133490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073762341498560