Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fistulifera_20solaris_20[genbank_20GCA_5F002217885.1_202017-06-26] 295 sequences; 49,736,633 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq226 98.7 8e-16 seq120 98.7 8e-16 >seq2 Length=622807 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||||| | ||||| |||| || || |||||||||||||||||| | Sbjct 352848 CCACCACGCAATCGGAGAACCAAATGCAAGGTCGATTCTTTCTGAATGTTGTAGTCGGAC 352907 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| |||||||||||||| ||||| |||||||| || ||||| Sbjct 352908 AGTGTTCGACCATCTTCCAACTGTTTTCCGGCGAAAATCAAACGCTGTTGATCCGGAGGA 352967 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | |||| ||| || Sbjct 352968 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACA 353027 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| ||||||| ||||| || ||||||||||| Sbjct 353028 TCGAGCGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATTTGCAT 353074 >seq226 Length=603765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||||||| ||| ||| |||| Sbjct 85641 AACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 85700 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||| |||||||| || || || | || ||||||||| Sbjct 85701 TCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 85760 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| ||| || || | ||| || ||| Sbjct 85761 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGATGGTC 85820 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| || || || ||||| Sbjct 85821 TTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 85852 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCG 45184 || |||||||| || || ||||||||| |||||||||||| ||| ||| |||| Sbjct 85869 AACACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAACGTGCGGCCGTCC 85928 Query 45185 TCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || |||||||| || ||||| |||||||| || || || | || ||||||||| Sbjct 85929 TCGAGCTGCTTTCCGGCAAAGATCAAACGCTGTTGATCAGGCGGAATTCCTTCCTTGTCC 85988 Query 45245 GCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTC 45304 || || ||| || | | | |||| ||| || || | ||| || ||| Sbjct 85989 TGGATCTTGGTCTTGACGTTGTCGATGGTGTCAGAGGGCTCAACATCGAGGGTGATGGTC 86048 Query 45305 TTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||| |||||| || || || ||||| Sbjct 86049 TTTCCGGTCAAAGTCTTGACGAAAATCTGCAT 86080 >seq120 Length=609189 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | ||||| | ||||| |||| || || ||||| |||||||| ||| | Sbjct 562010 CCACCACGCAATCGGAGAACCAAATGCAAGGTCGATTCTTTCTGGATGTTGTAATCGGAC 561951 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || |||| |||||||||||||| |||| |||||||| || ||||| Sbjct 561950 AGTGTTCGACCATCTTCCAACTGTTTTCCGGCGAAAATCAGACGCTGTTGATCCGGAGGA 561891 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||||||| || || ||| || | | |||| ||| || Sbjct 561890 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATAGTGTCAGACGGCTCGACA 561831 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | || || ||||| ||||||| ||||| || ||||||||||| Sbjct 561830 TCGAGCGTGATGGTCTTACCCGTCAAGGTCTTTACGAAGATTTGCAT 561784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395073779581195